Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq1241 145 2e-30 seq13 140 1e-28 seq629 104 7e-18 seq8 104 7e-18 >seq1241 Length=4265459 Score = 145 bits (160), Expect = 2e-30 Identities = 261/373 (70%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 28665 TCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTG 28724 |||||| |||| |||||||| ||||||| || | | ||| || | |||| Sbjct 4250737 TCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGCAACTTCTG 4250679 Query 28725 C-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTG 28783 || |||||||| |||||||| ||||| ||| | || |||||||| || || ||||||| Sbjct 4250678 TATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTG 4250619 Query 28784 TCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAG 28841 | ||||| | | || ||||||| ||| || || | | ||| | | || | | | Sbjct 4250618 TTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTG 4250559 Query 28842 CAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCT 28901 || || || || | ||||| ||||| || |||||||| | ||| ||||||||||| | Sbjct 4250558 CA--GCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTT 4250501 Query 28902 CTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CTATGCT 28959 ||||| || || || | | || | || | |||||| | |||| || || |||| Sbjct 4250500 ATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGCT 4250442 Query 28960 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTC 29019 || |||| || |||||||||||||| | ||| || || || | || |||||| ||| Sbjct 4250441 -ACGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTT 4250383 Query 29020 GCATACTCAGCTC 29032 ||||| ||| ||| Sbjct 4250382 GCATATTCAACTC 4250370 >seq13 Length=34719086 Score = 140 bits (154), Expect = 1e-28 Identities = 258/373 (69%), Gaps = 10/373 (3%) Strand=Plus/Plus Query 28665 TCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTG 28724 |||||| |||| |||||||| ||||||| || | | ||| || | |||| Sbjct 21513238 TCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGCAACTTCTG 21513296 Query 28725 C-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTG 28783 || |||||||| |||||| | ||||| ||| | || |||||||| || || ||||||| Sbjct 21513297 TATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTG 21513356 Query 28784 TCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAG 28841 | ||||| | | || ||||||| ||| || || | | ||| | | || | | | Sbjct 21513357 TTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTG 21513416 Query 28842 CAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCT 28901 || || || || | ||||| ||||| || |||||||| | ||| ||||||||||| | Sbjct 21513417 CA--GCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTT 21513474 Query 28902 CTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CTATGCT 28959 ||||| || || || | | || | || | |||||| | |||| || || ||| Sbjct 21513475 ATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC- 21513532 Query 28960 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTC 29019 ||| |||| || |||||||||||||| | | || || || | || |||||| ||| Sbjct 21513533 TACGTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTT 21513592 Query 29020 GCATACTCAGCTC 29032 ||||| ||| ||| Sbjct 21513593 GCATATTCARCTC 21513605 >seq629 Length=2291386 Score = 104 bits (114), Expect = 7e-18 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 29284 AACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGT 29343 || || ||||||| ||||| ||||| ||||| || || || |||||||| ||||| ||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 29344 TACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTC 29403 || ||||| | |||||||||||||||||| ||| || || | |||| |||||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 29404 TT 29405 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 104 bits (114), Expect = 7e-18 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 29284 AACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGT 29343 || || ||||||| ||||| ||||| ||||| || || || |||||||| ||||| ||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 29344 TACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTC 29403 || ||||| | |||||||||||||||||| ||| || || | |||| |||||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 29404 TT 29405 || Sbjct 4092038 TT 4092039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146663421190846