Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq1241 185 2e-42 seq13 178 4e-40 seq376 113 1e-20 seq1185 109 2e-19 seq14 109 2e-19 >seq1241 Length=4265459 Score = 185 bits (204), Expect = 2e-42 Identities = 291/406 (72%), Gaps = 12/406 (3%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| || | ||||||| | || || | |||||| || || |||||||| || Sbjct 4250769 TTTTGTAGCTAGATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTG 4250710 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | | ||| | || ||| | ||| || |||||||| ||||||||||||| Sbjct 4250709 ATGAT-CCTTACTTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCAC 4250652 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| |||| |||||||| || || || |||||| | || | | |||||||||| || Sbjct 4250651 CTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCA 4250592 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || | | ||| | |||| | | ||| || || || | ||||| ||||| Sbjct 4250591 ATATTATTTTTTGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCC 4250534 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 || |||||||| | ||| ||||||||||| | ||||| || || || | | || | Sbjct 4250533 TATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAAT 4250474 Query 19020 GGTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGC 19077 || | |||||| | |||| || || |||| || |||| || |||||||||||||| Sbjct 4250473 TGTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACGTGGGTCGTGAGTGGGAACTTAGT 4250416 Query 19078 TATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTC 19123 | ||| || || || |||||||||||| |||||| || ||| ||| Sbjct 4250415 TTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCAACTC 4250370 >seq13 Length=34719086 Score = 178 bits (196), Expect = 4e-40 Identities = 288/406 (71%), Gaps = 12/406 (3%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| || | ||||||| | || || | |||||| || || |||||||| || Sbjct 21513206 TTTTGTAGCTAGATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTG 21513265 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | | ||| | || ||| | ||| || |||||||| |||||| |||||| Sbjct 21513266 ATGAT-CCTTACTTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTRCTGCAC 21513323 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| |||| |||||||| || || || |||||| | || | | |||||||||| || Sbjct 21513324 CTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCA 21513383 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || | | ||| | |||| | | ||| || || || | ||||| ||||| Sbjct 21513384 ATATTATTTTTTGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCC 21513441 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 || |||||||| | ||| ||||||||||| | ||||| || || || | | || | Sbjct 21513442 TATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAAT 21513501 Query 19020 GGTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGC 19077 || | |||||| | |||| || || ||| ||| |||| || |||||||||||||| Sbjct 21513502 TGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGTGAGTGGGAACTTAGT 21513559 Query 19078 TATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTC 19123 | | || || || |||||||||||| |||||| || ||| ||| Sbjct 21513560 TTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCARCTC 21513605 Score = 87.8 bits (96), Expect = 5e-13 Identities = 131/180 (73%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 18733 TGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCG 18792 ||| |||| | || || ||||||||||| || || |||||||| ||| ||| || Sbjct 21517497 TGGATAACTWG-ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGAGGATCCCT 21517439 Query 18793 TGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGA 18851 | | | | | ||| ||||| || |||||||| |||||||||||||||| || ||| Sbjct 21517438 ACTTTATTGCCCACAACT-TTTGTATTTATTATTGCTTTCATTGCTGCACCTC-TG-AGA 21517382 Query 18852 CATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATC 18911 |||||||| || || || ||| || | || | | |||||||||||||| || || || Sbjct 21517381 TATTGATGGTATTCGTGAACCTATTTCTGGATTTTTACTTTATGGAAACAATATTATTTC 21517322 >seq376 Length=2445099 Score = 113 bits (124), Expect = 1e-20 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| ||||| |||| || || || ||||||||||| || || |||||||| || Sbjct 1076006 TTTTGTAACTGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1076065 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | | ||| | ||| || |||||||| |||||||||||||| Sbjct 1076066 ATGATCCCTACTTTATTGACCKCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACC 1076124 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 | ||||| |||||||| || | || |||||| | || | | |||||||||| ||| Sbjct 1076125 TYYGGTAGATATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 1076184 >seq1185 Length=2433339 Score = 109 bits (120), Expect = 2e-19 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| ||||| |||| || || || ||||||||||| || || |||||||| || Sbjct 1074383 TTTTGTAACTGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1074442 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | | ||| | ||| || |||||||| |||||||||||||| Sbjct 1074443 ATGATCCCTACTTTATTGACCTCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACC 1074501 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 | ||||| |||||||| || | || |||||| | || | | |||||||||| ||| Sbjct 1074502 TTYGGTAGATATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 1074561 >seq14 Length=29158859 Score = 109 bits (120), Expect = 2e-19 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| ||||| |||| || || || ||||||||||| || || |||||||| || Sbjct 26472196 TTTTGTAACTGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 26472255 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | | ||| | ||| || |||||||| |||||||||||||| Sbjct 26472256 ATGATCCCTACTTTATTGACCTCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACC 26472314 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 | ||||| |||||||| || | || |||||| | || | | |||||||||| ||| Sbjct 26472315 TTYGGTAGATATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAA 26472374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141146703146358