Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq9 100 3e-16 seq699 93.3 4e-14 seq1241 91.5 1e-13 seq855 91.5 1e-13 >seq9 Length=33717675 Score = 100 bits (110), Expect = 3e-16 Identities = 335/513 (65%), Gaps = 14/513 (3%) Strand=Plus/Plus Query 46761 CCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| || ||||||||||||||| ||| |||||||| || | | | Sbjct 737238 CCCTGCGT-CGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGA---CGGCTCTGAGTC 737293 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || ||||| || || || ||||| | || || || || ||||| Sbjct 737294 TTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAAGGGATTTTCTTCTCTGGGAGTTT 737353 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 | ||| || |||| | |||| || |||||||||| ||||| ||| ||||| Sbjct 737354 TTGCGCGATATTTTGGCTAAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCGAACGA 737413 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCG 46999 | ||||||| || ||||| || | ||| ||||| |||||| | ||| ||| Sbjct 737414 GCTGATCTCACGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTAC---TCGCT 737470 Query 47000 CGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCAT 47059 ||| |||| | | | ||| ||| | || || || | |||||| || Sbjct 737471 ACTGAGGCAGAAGCTGAGCGAGGATCGGATAAAGTCGATAGTTCGGAACGCGGTGGAGAT 737530 Query 47060 CGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117 ||| |||||||| | |||| |||||||| |||| || |||| ||||||| | Sbjct 737531 CGAGAAGGAGTTCGT--GTGCGACGCGCTGCCTTGCGCCCTGGTGGGGATGAACGGTGA- 737587 Query 47118 TCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACC 47176 ||| ||| || || || ||||| || || ||||| ||| ||| | | ||| | Sbjct 737588 TCTGATGAGCACCTACATCGAGTTCGTCGCAGATCGGCTGCTGGGCGCGTTGGGATACGG 737647 Query 47177 GAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAA 47236 |||| | || | | || || || || | ||| | || ||| |||| || Sbjct 737648 GAAAATGTACAACGTCCAGAACCCTTTCGATTGGATGGAGCTGATCAGCCTCCAGGGGAA 737707 Query 47237 AACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||||| || ||||||||||| ||||| ||||| Sbjct 737708 GACCAACTTCTTCGAGAAACGCGTCGGCGAGTA 737740 >seq699 Length=1873381 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | |||||||||| || ||||||||||| | |||||| ||||||| Sbjct 139823 ACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAGTCTGCAAGGGTACGGCCATCTTCG 139764 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| |||||||| || ||||| || || ||||| || || Sbjct 139763 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTGG 139704 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || |||| | |||||| |||| || | || || Sbjct 139703 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGATGACTCCACCTCGAGGGTGATGGTCTTG 139644 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || | || |||||||| Sbjct 139643 CCGGTGAGGGTCTTAACAAAGATCTGCAT 139615 >seq1241 Length=4265459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 46761 CCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| || ||||||||||||||| ||| |||||||| || ||| | Sbjct 519995 CCCTGCGT-CGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGA---CGGCTCCGAGTC 519940 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || ||||| || || || || || | || || ||||| ||||| Sbjct 519939 TTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTT 519880 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 ||| || |||| |||||| || |||||||||| ||||| ||| ||||| Sbjct 519879 CTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGA 519820 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGT 46982 |||||||||| ||||| || | ||| ||||| |||||| Sbjct 519819 ACTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGT 519777 >seq855 Length=4499644 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 46761 CCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| || ||||||||||||||| ||| |||||||| || ||| | Sbjct 754101 CCCTGCGT-CGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGA---CGGCTCCGAGTC 754046 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || ||||| || || || || || | || || ||||| ||||| Sbjct 754045 TTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTT 753986 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 ||| || |||| |||||| || |||||||||| ||||| ||| ||||| Sbjct 753985 CTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGA 753926 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGT 46982 |||||||||| ||||| || | ||| ||||| |||||| Sbjct 753925 ACTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGT 753883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476603746992360