Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1241 342 7e-88 seq855 342 7e-88 seq9 306 5e-77 seq439 235 8e-56 seq1028 120 4e-21 seq294 109 8e-18 seq8 91.5 2e-12 >seq1241 Length=4265459 Score = 342 bits (378), Expect = 7e-88 Identities = 420/564 (74%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773 ||||||||||| || | |||||| ||||||| ||| |||| || |||| |||| | Sbjct 520388 GAGCCGCTGCTAGCTCC-KAACCCGGACCGCTTCTGTA-TGTTTCCGATCCAGTACCCGG 520331 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 || |||||||||||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct 520330 AAATCTGGGAAATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGAC 520272 Query 1455834 CTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 || || |||| |||||||| | | || ||||| |||| | || ||| || | Sbjct 520271 CTATGCCAGGACATCCGCCACTGGGAGGCCCTATCCGACGGCGAGAGGCACTTCGTCTCG 520212 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||| | |||||||| || ||| ||| ||| |||||||| ||||| || || || | Sbjct 520211 CACATTCTCGCCTTCTT-CGCTGCCTCCGACGGCATCGTCCTTGAGAATCTCGCTGGGAG 520153 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 |||||||| |||||||| | | ||||| || || |||||||||||||| ||||| Sbjct 520152 GTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATAGCCAT 520093 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||||||||| || | ||| ||||| |||| || ||| |||||||| | | Sbjct 520092 TGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGA 520033 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||||||| ||| |||||| | ||| |||||||| | || | || ||| |||||| | Sbjct 520032 CGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCA 519973 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGG 1456192 ||||| ||| |||||| || ||| ||| |||| || ||||| |||| | Sbjct 519972 GTGGGCCCTGAGATGGATC------GACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGC 519919 Query 1456193 CTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||||| |||| ||||| || || |||||||| ||||||||||| || |||||||| || Sbjct 519918 CTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATATTTTGGCTTAA 519859 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 519858 AAAGCGCGGTTTAATGCCGGGACT 519835 >seq855 Length=4499644 Score = 342 bits (378), Expect = 7e-88 Identities = 420/564 (74%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773 ||||||||||| || | |||||| ||||||| ||| |||| || |||| |||| | Sbjct 754494 GAGCCGCTGCTAGCTCC-KAACCCGGACCGCTTCTGTA-TGTTTCCGATCCAGTACCCGG 754437 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 || |||||||||||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct 754436 AAATCTGGGAAATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGAC 754378 Query 1455834 CTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 || || |||| |||||||| | | || ||||| |||| | || ||| || | Sbjct 754377 CTATGCCAGGACATCCGCCACTGGGAGGCCCTATCCGACGGCGAGAGGCACTTCGTCTCG 754318 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||| | |||||||| || ||| ||| ||| |||||||| ||||| || || || | Sbjct 754317 CACATTCTCGCCTTCTT-CGCTGCCTCCGACGGCATCGTCCTTGAGAATCTCGCTGGGAG 754259 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 |||||||| |||||||| | | ||||| || || |||||||||||||| ||||| Sbjct 754258 GTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATAGCCAT 754199 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||||||||| || | ||| ||||| |||| || ||| |||||||| | | Sbjct 754198 TGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGA 754139 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||||||| ||| |||||| | ||| |||||||| | || | || ||| |||||| | Sbjct 754138 CGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCA 754079 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGG 1456192 ||||| ||| |||||| || ||| ||| |||| || ||||| |||| | Sbjct 754078 GTGGGCCCTGAGATGGATC------GACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGC 754025 Query 1456193 CTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||||| |||| ||||| || || |||||||| ||||||||||| || |||||||| || Sbjct 754024 CTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATATTTTGGCTTAA 753965 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 753964 AAAGCGCGGTTTAATGCCGGGACT 753941 >seq9 Length=33717675 Score = 306 bits (338), Expect = 5e-77 Identities = 410/563 (73%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||||| || | |||||| ||||||| | ||||||| |||| |||| Sbjct 736845 GAGCCGCTGCTAGCTCCG-AACCCGGACCGCTTCTGCATGTTCCCGATCCAGTACCCTGA 736903 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || |||||||||||| || ||||| || |||||||| |||||||||||||||||||||| Sbjct 736904 AATCTGGGAAATGTAC-AAGAAGGCGGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGACC 736962 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | || ||| |||||||| | || ||||| |||| | || ||| || || Sbjct 736963 TTTGCCAGGACGTCCGCCACTGGGAAGCTCTATCCGACGGCGAGAGGCACTTCGTCTCGC 737022 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 || |||||||||| || |||||| |||||| || || ||||| || ||||| | Sbjct 737023 ACATCCTCGCCTTCTT-CGCCGCTTCCGATGGAATTGTCCTGGAGAATCTCGCCGGAAGG 737081 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || ||||| |||||||| | | ||||| || || ||||||||||||||||| ||| Sbjct 737082 TTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCAATC 737141 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| || | ||| ||||| |||| || ||| ||||||| | | | Sbjct 737142 GAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGATTCTGAC 737201 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 |||||| ||| |||||| | ||| |||||||| | || | || ||| |||||| | Sbjct 737202 GAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAG 737261 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGC 1456193 ||||| ||| |||||| || ||| || |||| || ||||| |||| | | Sbjct 737262 TGGGCCCTGAGATGGATC------GACGGCTCTGAGTCTTTCGCGGAGCGAATCGTGGCC 737315 Query 1456194 TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 |||||| |||| || || || || ||||| || ||||| ||||| || |||||||| || Sbjct 737316 TTTGCCTGCGTGGAAGGGATTTTCTTCTCTGGGAGTTTTTGCGCGATATTTTGGCTAAAA 737375 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 737376 AAGCGCGGTTTAATGCCGGGACT 737398 >seq439 Length=4537371 Score = 235 bits (260), Expect = 8e-56 Identities = 307/422 (73%), Gaps = 2/422 (0%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 |||||| ||||||| | ||||||| |||| |||| || |||||||||||| || Sbjct 763535 AACCCGGACCGCTTCTGCATGTTCCCGATCCAGTACCCTGAAATCTGGGAAATGTAC-AA 763477 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 ||||| || |||||||| ||||| ||||||||||||||||| || ||| ||| Sbjct 763476 GAAGGCGGAAGCCTCCTTCTGGACAGCCGAGGAGGTCGACCTTTGCCAGGACGTCCGCCA 763417 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 ||||| | || ||||| |||| | || || || |||| |||||||||| || || Sbjct 763416 CTGGGAAGCTCTATCCGACGGCGAGAGGCACTTTGTCTCGCACATCCTCGCCTTCTT-CG 763358 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 |||| |||||| || || ||||| || ||||| | || ||||| |||||||| Sbjct 763357 CCGCTTCCGATGGAATTGTCCTGGAGAATCTTGCCGGAAGGTTCATGAAGGAGGTCCAGG 763298 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 | | ||||| || || ||||||||||||||||| ||||| ||||||||||| || | Sbjct 763297 TCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCAATCGAGAACATCCACTCCGAGA 763238 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 ||| ||||| |||| || ||| ||||||| | | ||||||| ||| |||||| | Sbjct 763237 TGTACAGCCTCCTTCTCGAGACGTACATCAAGGATTCTGACGAGAAGCACCGCCTCTTCC 763178 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 ||| |||||||| | || | || ||| |||||| | ||||| ||| |||||| Sbjct 763177 ACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCG 763118 Query 1456154 AC 1456155 || Sbjct 763117 AC 763116 >seq1028 Length=3150221 Score = 120 bits (132), Expect = 4e-21 Identities = 231/337 (69%), Gaps = 3/337 (1%) Strand=Plus/Minus Query 1455817 CCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACG 1455876 || |||||||||||||||| || |||| ||||||| | || |||| | | Sbjct 1539087 CCTCCGAGGAGGTCGACCTATGCCAGGACATTCACCACTGGAAAGCCCTATCCGACAATG 1539028 Query 1455877 AGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCC 1455936 || | || ||| || ||| | |||||||| || ||| || ||| ||||||| Sbjct 1539027 AGAGGCACTTCGTCTCACACATTCTCGCCTTCTT-CGCTACCTCCGACAGCATCGTCCTT 1538969 Query 1455937 GAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT-GCCAGAGGCACGTTTGTTTTA 1455995 |||| | | || | |||||||| |||||||| | |||| |||| ||| || || Sbjct 1538968 AAGAATCGTGTTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCA-AGGCTCGTGCCTTCTA 1538910 Query 1455996 CGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACAC 1456055 ||||||||||||| |||| || ||||||||||| | | || ||||| || | | Sbjct 1538909 CGGGTTCCAGATCACCATTGAGAACATCCACTCCAAGATGTATAGCCTCCTTCTCAAGAT 1538850 Query 1456056 CTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTC 1456115 ||| |||| ||| | | ||||||| | | |||||| | ||| |||||||| | || | Sbjct 1538849 GTACATCAAAGACTCCGACGAGAAGCATCGCCTCTTCCACGCAATCGACACCATCCCCTG 1538790 Query 1456116 GGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 || ||| |||||| | ||| | ||| |||||| Sbjct 1538789 CGTCGCGAAGAAGGCCCAGTGGACCCTGAGATGGATC 1538753 >seq294 Length=3929810 Score = 109 bits (120), Expect = 8e-18 Identities = 195/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 1455822 GAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGC 1455881 |||||||||||||| || |||| |||||||| | | |||| | || | Sbjct 3794992 GAGGAGGTCGACCTATGCCAAGACATTCGCCACTGGGAAGCCATATCCGACTGCAAGAGG 3794933 Query 1455882 CATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAA 1455941 || |||||| ||| | |||| | || ||||| ||| ||||||||| || ||||| Sbjct 3794932 CACTTCATCTCGCATATTCTCGGCCTTCTTCGCTGCCTCCGATGGCATTGTCCTTGAGAA 3794873 Query 1455942 CCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTT 1456001 || || | | |||||||| |||||| | | ||||| | || |||||||| Sbjct 3794872 TCTTGCTGAGAGGTTTATGAAGGAGGTCGAGGTCGTTGAGGCCAACTCCTTCTACGGGTT 3794813 Query 1456002 CCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGT 1456061 ||||||||| || || |||||||| || | | ||| ||||| || | || || | Sbjct 3794812 CCAGATCGCTATTGAGAACATCCATTCCAAGATGTACAACCTCCTTCTCAAGACGCACAT 3794753 Query 1456062 CAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106 |||||| | | ||||||| || |||||| | ||| |||||||| Sbjct 3794752 TAAGGACTCCGACGAGAAGCACTGCCTCTTCCACGCGATCGACAC 3794708 >seq8 Length=29603939 Score = 91.5 bits (100), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || |||||||| |||||| | || ||| |||| |||| || Sbjct 10621443 ATCTTCAAGGTCCTGAAGCAGGTCCACCCCGATATCGGA-----ATC-TCCAGCAAGGCC 10621496 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| | ||| || Sbjct 10621497 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCCTCA 10621556 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || ||| | | ||||||| |||||| | || ||||| ||||| |||||| Sbjct 10621557 CGGCTCGCGAGGTACAACAAGAAGCCGACGATCACTTCCCGGGAGATACAGACGGCCGTG 10621616 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | ||| ||| || || || | |||||||||||| ||||| || Sbjct 10621617 CGTCTGGTGCTGCCCGGTGAGCTTGCTAAGCACGCCGTCTCTGAGGGGAC 10621666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177690538750662