Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq9 260 2e-64 seq672 251 8e-62 seq1241 125 8e-24 seq13 118 1e-21 seq11 113 5e-20 seq629 107 2e-18 seq8 107 2e-18 >seq9 Length=33717675 Score = 260 bits (288), Expect = 2e-64 Identities = 445/638 (70%), Gaps = 8/638 (1%) Strand=Plus/Plus Query 161817 TGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGT-- 161874 |||||||||||| | | || ||||||||| | || || | ||||| |||| || | Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTT-CTTA-AGTGATG 26714246 Query 161875 CAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAG 161933 ||||| |||||| ||| | | | | || | |||| || || || ||||||||||| Sbjct 26714247 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 161934 GCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTC 161993 || ||||| ||||| || ||| ||| | || | || | || |||||| ||||| Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 161994 CATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATT 162053 ||||| || |||| ||||| || || ||| | ||||| ||||| || || || | || Sbjct 26714366 CATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTT 26714424 Query 162054 GGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTC 162113 | | | || | ||||| ||||| ||||| ||||| ||||||||||| || || Sbjct 26714425 GAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTGTA 26714483 Query 162114 TTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCA 162173 ||||| || || || || |||||||| |||||||| || || || ||||| || ||| Sbjct 26714484 TTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCA 26714543 Query 162174 GCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTC 162233 || || ||| ||||| | | ||| | || || || ||||| ||||| || ||||| || Sbjct 26714544 GCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTT 26714603 Query 162234 CATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTC 162293 |||||||||||||||| ||| | | || | || | ||| ||||||||||| | Sbjct 26714604 CATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGCT 26714663 Query 162294 ACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGAT 162353 | | ||||||| |||| | ||||| || ||||| || || | || | Sbjct 26714664 ATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAAC 26714723 Query 162354 TCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 162413 | || || | ||||| |||||||| |||||||| | |||| ||| ||||| || ||| Sbjct 26714724 CCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATC 26714783 Query 162414 TTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTT 162451 || | |||| ||||| || || || ||| | ||||| Sbjct 26714784 TTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 26714821 >seq672 Length=1945142 Score = 251 bits (278), Expect = 8e-62 Identities = 516/767 (67%), Gaps = 35/767 (5%) Strand=Plus/Minus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | | || | || ||||||||||| || |||||| | Sbjct 1649958 TTTGATATTATGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGC 1649899 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 | | || |||| ||| ||| | ||| | || |||||| | || | ||| Sbjct 1649898 CAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAA----TTTA 1649847 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 161867 | |||||||||||| | | || ||||||||| | || || ||||| ||| Sbjct 1649846 ------ATTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTT-CTT 1649794 Query 161868 ACAGCGT--CAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 161924 | || | ||||| |||||| ||| | | | | || | |||| || || || ||| Sbjct 1649793 A-AGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGG 1649736 Query 161925 GGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTT 161984 |||||||| || ||||| ||||| || ||| ||| | || | || | || |||| Sbjct 1649735 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTT 1649676 Query 161985 GTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCA 162044 || ||||| ||||| || |||| ||||| || || ||| | ||||| ||||| || || Sbjct 1649675 GTTGCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCT 1649617 Query 162045 CGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 162104 || | || | | || | ||||| ||||| ||||| ||||| |||||||||||| Sbjct 1649616 CGATCTGTTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTT 1649557 Query 162105 GTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 162164 || || ||||| || || | || |||||||| ||||||| || || || ||| Sbjct 1649556 GTTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTT 1649497 Query 162165 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTG 162224 || || ||||| || ||| ||||| | | ||| | || || || ||||| ||||| || Sbjct 1649496 GGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTA 1649437 Query 162225 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATT 162284 ||||| || |||||||||||||||| ||| | | || | || | ||| |||||| Sbjct 1649436 AACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATT 1649377 Query 162285 CACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAG 162344 ||||| | | | ||||||| |||| | ||||| | ||| || Sbjct 1649376 CACGGTGCTATCATARAAAATACTTTATTTGGAGATGG-------GGAAATTCC------ 1649330 Query 162345 GCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 162404 |||| | | || || | ||||| |||||||| |||||||| | |||| ||| ||| Sbjct 1649329 -GGTTTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGG 1649271 Query 162405 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTT 162451 || || ||||| | |||| ||||| || || || ||| | ||||| Sbjct 1649270 TCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 1649224 >seq1241 Length=4265459 Score = 125 bits (138), Expect = 8e-24 Identities = 245/356 (69%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 160002 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGT 160060 || ||||| || || ||||||| | ||| | ||| | ||||| ||||| || || | Sbjct 4250727 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 4250669 Query 160061 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 160120 || ||| | ||||| || || | || || || || || |||||||| || |||| || Sbjct 4250668 TGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4250609 Query 160121 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 160180 | | ||||| | ||| || || | | |||| || |||| |||| || || || Sbjct 4250608 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 4250549 Query 160181 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 160240 | | ||||| || || || |||||||| | || ||||||| ||| | || || ||||| Sbjct 4250548 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 4250489 Query 160241 TCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGT 160298 ||||| | || | || | |||||| | | || | || ||| || |||| ||| Sbjct 4250488 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGT 4250431 Query 160299 GAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTC 160354 |||||||||||| | ||| | ||||| ||||| ||||| ||| |||||||| Sbjct 4250430 GAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 118 bits (130), Expect = 1e-21 Identities = 245/361 (68%), Gaps = 6/361 (2%) Strand=Plus/Plus Query 160002 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGT 160060 || ||||| || || ||||||| | ||| | ||| | ||||| ||||| || || | Sbjct 21513248 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 21513306 Query 160061 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 160120 || ||| | |||| || || | || || || || || |||||||| || |||| || Sbjct 21513307 TGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 21513366 Query 160121 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 160180 | | ||||| | ||| || || | | |||| || |||| |||| || || || Sbjct 21513367 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 21513426 Query 160181 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 160240 | | ||||| || || || |||||||| | || ||||||| ||| | || || ||||| Sbjct 21513427 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 21513486 Query 160241 TCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGT 160298 ||||| | || | || | |||||| | | || | || ||| || |||| ||| Sbjct 21513487 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGT 21513544 Query 160299 GAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCT 160358 |||||||||||| | | | ||||| ||||| ||||| ||| |||||||| || Sbjct 21513545 GAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCARCT 21513604 Query 160359 C 160359 | Sbjct 21513605 C 21513605 >seq11 Length=35299535 Score = 113 bits (124), Expect = 5e-20 Identities = 206/302 (68%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 162404 GTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 162463 ||| || ||||| || |||| |||| || || | ||| | ||||| | ||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 162464 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCT 162523 ||| | || | ||| |||||| || ||| | | ||||| || | ||||| Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGGTCTGGCCTTGAACCT 68791 Query 162524 TCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAAC 162583 |||| || ||||| || |||| | ||| | || |||||||||||| ||||| || Sbjct 68790 ACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAGAC 68731 Query 162584 GTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGA 162643 ||||| || || || ||||| | |||||||| ||| ||| ||| | | || || Sbjct 68730 TTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAAGA 68671 Query 162644 CCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTA 162703 || || |||| ||| |||| ||||| || || ||| | || | || ||||| ||||| Sbjct 68670 TCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCTTTA 68611 Query 162704 AT 162705 || Sbjct 68610 AT 68609 >seq629 Length=2291386 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 160611 AACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGT 160670 || |||||||| | || |||||||||||||| |||||||| ||||| || || |||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 160671 TACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTC 160730 || || || | ||||||||||||||||| || |||||||| | ||| | |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 160731 TT 160732 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 160611 AACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGT 160670 || |||||||| | || |||||||||||||| |||||||| ||||| || || |||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 160671 TACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTC 160730 || || || | ||||||||||||||||| || |||||||| | ||| | |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 160731 TT 160732 || Sbjct 4092038 TT 4092039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559495250756200