Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq9 251 9e-62 seq672 228 1e-54 seq11 134 2e-26 seq629 98.7 1e-15 seq12 98.7 1e-15 seq8 98.7 1e-15 seq725 87.8 2e-12 >seq9 Length=33717675 Score = 251 bits (278), Expect = 9e-62 Identities = 446/641 (70%), Gaps = 8/641 (1%) Strand=Plus/Plus Query 182488 GTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCA- 182546 ||||||| ||||| | | || ||||||| | ||||| ||||||| |||| | | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTT-CTTAAGTGAT 26714245 Query 182547 GCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGA 182605 || || || || || ||| || | | | || | |||| || | ||| ||||||||||| Sbjct 26714246 GCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGA 26714304 Query 182606 GTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCT 182665 | || || |||| || ||||| ||| | || | || | || ||| || || || Sbjct 26714305 AGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACT 26714364 Query 182666 CCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGA 182724 || || || |||| || || ||||| ||| | | |||||||| |||||||| ||| Sbjct 26714365 ACATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTG- 26714422 Query 182725 TTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTG 182784 ||| | | |||||| ||||| ||||| || || ||||| |||||||| || || || Sbjct 26714423 TTGAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTG 26714481 Query 182785 TGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCG 182844 | ||||| || ||||| || || ||||| |||||| || || || |||||||| | Sbjct 26714482 TATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAG 26714541 Query 182845 CGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCT 182904 | || || || | ||| | | || | ||||| || || || |||||||| ||||| | Sbjct 26714542 CAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCAT 26714601 Query 182905 TCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTG 182964 | |||||||||||||||| ||| | |||| | || || | | ||||| || |||| Sbjct 26714602 TTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTG 26714661 Query 182965 TCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCG 183024 | || | ||||| || | || |||||| || ||||| ||||| | ||| Sbjct 26714662 CTATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCA 26714721 Query 183025 ATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAA 183084 | | ||||| | || || || ||||| ||||| || | || | |||||||| |||| Sbjct 26714722 ACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAA 26714781 Query 183085 TCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTC 183125 |||| ||||||| ||| |||||| |||||||| || ||| Sbjct 26714782 TCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 228 bits (252), Expect = 1e-54 Identities = 507/758 (67%), Gaps = 35/758 (5%) Strand=Plus/Minus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | | || | ||||| || ||||| ||||||||| | | |||| Sbjct 1649948 TGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGCCAATTACTCT 1649889 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||| ||| | || | || |||||| | ||| ||| | || Sbjct 1649888 TTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT-----GGAAT-------TTA--ATTT 1649843 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCA-GCT 182549 |||| ||||| | | || ||||||| | ||||| |||||| |||| | | || Sbjct 1649842 GGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTT-CTTAAGTGATGCA 1649784 Query 182550 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAGTC 182608 || || || || ||| || | | | || | |||| || | ||| ||||||||||| | Sbjct 1649783 GTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGC 1649725 Query 182609 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 182668 || || |||| || ||||| ||| | || | || | || ||| || || || || Sbjct 1649724 ACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACA 1649665 Query 182669 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTG 182727 || || |||| || || ||||| ||| | | |||||||| |||||||| ||| || Sbjct 1649664 TGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTG-TTS 1649607 Query 182728 GAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGT 182787 | | |||||| ||||| ||||| || || ||||| |||||||| || || ||| | Sbjct 1649606 AATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTAT 1649547 Query 182788 TCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGG 182847 |||| || |||| || || ||||| |||||| || || || |||||||| || | Sbjct 1649546 TCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 1649487 Query 182848 CGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCC 182907 | || || | ||| | | || | ||||| || || || |||||||| ||||| || | Sbjct 1649486 CTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTC 1649427 Query 182908 ATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCA 182967 ||||||||||||||| ||| | |||| | || || | | ||||| || |||| | Sbjct 1649426 ATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGTGCTA 1649367 Query 182968 CAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATT 183027 || | ||||| || | || |||||| ||| ||| ||| | Sbjct 1649366 TCATARAAAATACTTTATTTGGAGATGGGGAA-----------ATT---CCGGTTTAACC 1649321 Query 183028 CCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCT 183087 | ||||| | || || || ||||| ||||| || | || | |||||||| ||||||| Sbjct 1649320 CAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCT 1649261 Query 183088 TCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTC 183125 | ||||||| ||| |||||| |||||||| || ||| Sbjct 1649260 TTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq11 Length=35299535 Score = 134 bits (148), Expect = 2e-26 Identities = 208/297 (70%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 183077 GTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTT 183136 ||| || ||||| |||||||| || |||||| | |||||| || ||| ||||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 183137 TGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCT 183196 ||| | || | ||| | ||| | | || ||| | | || || || | || || Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGGTCTGGCCTTGAACCT 68791 Query 183197 TCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGAC 183256 |||| ||||||||||| ||| | || | || |||||||||||| || ||||| Sbjct 68790 ACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAGAC 68731 Query 183257 GTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGA 183316 ||||| || || || || || | |||||||| ||| ||||||| ||| || || Sbjct 68730 TTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAAGA 68671 Query 183317 TCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 ||| || |||||||| | || |||||||| || ||| |||| | || ||||| || Sbjct 68670 TCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCT 68614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 183235 CAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTAC 183294 || ||||||||||||| ||||| |||||||||| || || || | |||||||| | | Sbjct 34851773 CAAAAGATCCTGAGTTTGAGACTCTCTACACAAAAAATATTCTCTTAAATGAAGGTATTC 34851832 Query 183295 GTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACT-TCATCTTCCCTGAAGAAGTT 183353 |||||||| |||| || ||| | || |||||||| | | || ||| ||| || ||| Sbjct 34851833 GTGCTTGGATGGCGGCTCAAGATTAGCCTCATGAAAAATCTTATAATCCTTGAGGAGGTT 34851892 Query 183354 CTACC 183358 ||||| Sbjct 34851893 CTACC 34851897 >seq629 Length=2291386 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 181632 AACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGT 181691 || || ||||||| || || ||||| ||||| || ||||| ||||| || || || ||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 181692 TACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTC 181751 || ||||| | |||||||||||||||||| || |||||||| | ||| | |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 181752 TT 181753 || Sbjct 2029913 TT 2029912 >seq12 Length=31678690 Score = 98.7 bits (108), Expect = 1e-15 Identities = 100/129 (78%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 183231 GCAGCAGAAGATCCTGAGTTC-GAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGG 183289 ||| | ||||||||||| || ||||| |||||||| || || || || | | |||||| Sbjct 15529651 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15529592 Query 183290 ACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGA 183349 | | ||||||| ||||| || |||||||| ||||||||| | || ||||||||||| Sbjct 15529591 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15529532 Query 183350 AGTTCTACC 183358 ||| |||| Sbjct 15529531 GGTTTTACC 15529523 Score = 93.3 bits (102), Expect = 5e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 183231 GCAGCAGAAGATCCTGAGTTC-GAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGG 183289 ||| | ||||||||||| || ||||| |||||||| || || || || | | |||||| Sbjct 15589922 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15589863 Query 183290 ACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGA 183349 | | ||||||| ||||| || |||||||| ||||||||| | || ||||||||||| Sbjct 15589862 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15589803 Query 183350 -AGTTCTACC 183358 ||| |||| Sbjct 15589802 GGGTTTTACC 15589793 >seq8 Length=29603939 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 181632 AACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGT 181691 || || ||||||| || || ||||| ||||| || ||||| ||||| || || || ||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 181692 TACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTC 181751 || ||||| | |||||||||||||||||| || |||||||| | ||| | |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 181752 TT 181753 || Sbjct 4092038 TT 4092039 >seq725 Length=1948186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 183235 CAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTAC 183294 || ||||||||||||| ||||| |||||||||| || || || | |||||||| | | Sbjct 1573254 CAAAAGATCCTGAGTTTGAGACTCTCTACACAAAAAATATTCTCTTAAATGAAGGTATTC 1573313 Query 183295 GTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACT-TCATCTTCCCTGAAGAAGTT 183353 |||||||| |||| || ||| | || |||||||| | | || ||| ||| || ||| Sbjct 1573314 GTGCTTGGATGGCGGCTCAAGATTAGCCTCATGAAAAATCTTATAATCCTTGAGGAGGTT 1573373 Query 183354 CTACC 183358 ||||| Sbjct 1573374 CTACC 1573378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614607988917280