Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq9 214 3e-50 seq672 194 2e-44 seq1241 181 2e-40 seq13 172 8e-38 seq1081 102 1e-16 seq629 86.0 9e-12 seq11 86.0 9e-12 seq8 86.0 9e-12 seq376 84.2 3e-11 >seq9 Length=33717675 Score = 214 bits (236), Expect = 3e-50 Identities = 433/639 (68%), Gaps = 4/639 (1%) Strand=Plus/Plus Query 175978 GTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGG 176037 ||||||| |||||| | | || ||||||| | || || ||||||| | | | | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATG 26714246 Query 176038 CTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAA 176096 | || || ||||| ||| || | | | || | |||| || | ||| |||||||||||| Sbjct 26714247 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 176097 TCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTC 176156 | || || || || || ||| ||| | || | || | | | |||||||| || Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 176157 CACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATT 176216 || || || |||| || || || || ||| | ||||| ||||| || || || || Sbjct 26714366 CATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTT 26714424 Query 176217 GGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTG 176276 | | | || | || || ||||||||| ||||| || ||||| ||||| ||| Sbjct 26714425 GAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGT-TTTGTTTCTGTA 26714483 Query 176277 TTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCA 176336 || || | || || ||||||| ||| ||||||||||| || |||||||| ||| Sbjct 26714484 TTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCA 26714543 Query 176337 GCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTC 176396 || || ||| ||||| | | ||| | ||||| || || || |||||||| ||||| || Sbjct 26714544 GCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTT 26714603 Query 176397 CATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTT 176456 |||||||||||||||| ||| | | || | || | ||| || || || || | | Sbjct 26714604 CATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGCT 26714663 Query 176457 ACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGAT 176516 | | ||||||| ||| || |||||| || || || ||| || ||| | Sbjct 26714664 ATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAAC 26714723 Query 176517 TCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATC 176576 | || || | ||||| || ||||| ||||| || | |||| ||| ||||| |||||| Sbjct 26714724 CCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATC 26714783 Query 176577 TTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTC 176615 || ||||||| ||| ||||| |||||| | || ||| Sbjct 26714784 TTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 194 bits (214), Expect = 2e-44 Identities = 424/638 (66%), Gaps = 17/638 (3%) Strand=Plus/Minus Query 175979 TTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGGC 176038 |||||| |||||| | | || ||||||| | || || |||||| | | | || Sbjct 1649844 TTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTAAGTGATGC 1649785 Query 176039 TGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAAT 176097 || || ||||| ||| || | | | || | |||| || | ||| |||||||||||| Sbjct 1649784 AGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAG 1649726 Query 176098 CTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCC 176157 | || || || || || ||| ||| | || | || | | | |||||||| || | Sbjct 1649725 CACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTAC 1649666 Query 176158 ACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTG 176217 | || || |||| || || || || ||| | ||||| ||||| || || || || Sbjct 1649665 ATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTTS 1649607 Query 176218 GTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGT 176277 | | || | || || ||||||||| ||||| || ||||| ||||| ||| | Sbjct 1649606 AATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTAT 1649547 Query 176278 TTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAG 176337 | || | || | ||||||| ||| ||||||||||| || |||||||| |||| Sbjct 1649546 TCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 1649487 Query 176338 CAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCC 176397 | || ||| ||||| | | ||| | ||||| || || || |||||||| ||||| || | Sbjct 1649486 CTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTC 1649427 Query 176398 ATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTA 176457 ||||||||||||||| ||| | | || | || | ||| || || || || | || Sbjct 1649426 ATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGTGCTA 1649367 Query 176458 CTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATT 176517 | ||||||| ||| || |||||| ||| ||| ||| | Sbjct 1649366 TCATARAAAATACTTTATTTGGAGATGGGGAA-----------ATTC---CGGTTTAACC 1649321 Query 176518 CCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCT 176577 | || || | ||||| || ||||| ||||| || | |||| ||| ||||| ||||||| Sbjct 1649320 CAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCT 1649261 Query 176578 TCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTC 176615 | ||||||| ||| ||||| |||||| | || ||| Sbjct 1649260 TTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 181 bits (200), Expect = 2e-40 Identities = 263/369 (71%), Gaps = 2/369 (1%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 |||| ||||||| | || ||||| |||||| | ||||| | ||| || || |||||||| Sbjct 4250742 AATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT 4250683 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || ||||| |||||| | | ||| || ||| | || || || || || ||||| Sbjct 4250682 -TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGA 4250624 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || |||| || | | ||||||| ||| || || | | |||| || |||||| Sbjct 4250623 ACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTAC 4250564 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || || ||| | ||||| ||||| || |||||||| | | | || ||||| Sbjct 4250563 TTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATG 4250504 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | ||||| |||||||||| | ||| |||| | |||||| | ||||| | Sbjct 4250503 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 4250444 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 ||| |||| |||||||||||||| || |||| | ||||| | |||||||| ||| Sbjct 4250443 CTACGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGT 4250384 Query 174854 AGCATACTC 174862 ||||| || Sbjct 4250383 TGCATATTC 4250375 >seq13 Length=34719086 Score = 172 bits (190), Expect = 8e-38 Identities = 260/369 (70%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 |||| ||||||| | || ||||| |||||| | ||||| | ||| || || |||||||| Sbjct 21513233 AATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT 21513292 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || ||||| |||||| | ||| || ||| | || || || || || ||||| Sbjct 21513293 -TCTGTATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGA 21513351 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || |||| || | | ||||||| ||| || || | | |||| || |||||| Sbjct 21513352 ACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTAC 21513411 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || || ||| | ||||| ||||| || |||||||| | | | || ||||| Sbjct 21513412 TTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATG 21513471 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | ||||| |||||||||| | ||| |||| | |||||| | ||||| | Sbjct 21513472 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 21513531 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 ||| |||| |||||||||||||| || | | | ||||| | |||||||| ||| Sbjct 21513532 CTACGTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGT 21513591 Query 174854 AGCATACTC 174862 ||||| || Sbjct 21513592 TGCATATTC 21513600 >seq1081 Length=585217 Score = 102 bits (112), Expect = 1e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 176307 TGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAG 176366 ||||||||||| | | ||| |||||||||| || ||| ||||| | | ||| | ||| Sbjct 578911 TGGTTCTTTGCGCTCAATTTTCGTGTGGCAGCTATATTTTGATTCATCCTCTTTTTCCAG 578852 Query 176367 GGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGT 176426 || || || || || ||| ||||| || ||||||||| |||||| ||| | | || Sbjct 578851 GGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTGGAGTGTTGGGC 578792 Query 176427 GGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGA 176486 || || ||| | || ||||| |||||||| ||| |||| ||| ||||||||| Sbjct 578791 ACTGCTCTRTTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTATTTGAAGATGGT 578732 Query 176487 GA 176488 || Sbjct 578731 GA 578730 >seq629 Length=2291386 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 175119 AACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGC 175178 || || ||||||| || || ||||| ||||| ||||| || ||||| || || ||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 175179 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTC 175238 || || || | |||||||||||||| ||| || |||||||| | || | |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 175239 TT 175240 || Sbjct 2029913 TT 2029912 >seq11 Length=35299535 Score = 86.0 bits (94), Expect = 9e-12 Identities = 202/302 (67%), Gaps = 16/302 (5%) Strand=Plus/Minus Query 176567 GTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTT 176626 ||| || ||||| |||||||| || ||||| | |||| | || ||| ||||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 176627 TGTCCCTGTCATGGGTCTTTGGGT-----CTC---AAGTATTGGCATCATTGGGCTTGCT 176678 ||| | || | ||| | ||| | ||| ||||| ||| || ||| |||| Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGG-TC--TGGCCTTG-- 68796 Query 176679 CTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAG 176738 || || |||| ||||||||||| || | || | || |||||||||||| Sbjct 68795 ---AACCTACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAA 68739 Query 176739 TTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCA 176798 ||||| |||||||| || || || || || | || ||||| || || ||||||| Sbjct 68738 TTTGAGACTTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTG 68679 Query 176799 CCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAAC 176858 || ||||| || |||| || ||||||| || || ||| |||| | || ||| Sbjct 68678 GCTCAAGATCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAAC 68619 Query 176859 GC 176860 || Sbjct 68618 GC 68617 >seq8 Length=29603939 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 175119 AACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGC 175178 || || ||||||| || || ||||| ||||| ||||| || ||||| || || ||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 175179 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTC 175238 || || || | |||||||||||||| ||| || |||||||| | || | |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 175239 TT 175240 || Sbjct 4092038 TT 4092039 >seq376 Length=2445099 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/153 (72%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | || ||||| |||||| | ||||| ||||| || || || ||||| Sbjct 1076033 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCKCAACT 1076092 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || ||||| |||||| | | ||| || || || || || || || | ||| Sbjct 1076093 -TCTGTATTTATTATTGCTTTCATTGCTGCACCTYYGGTAGATATTGATGGTATTCRTGA 1076151 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAA 174646 ||| || |||| || | | ||||||| ||| Sbjct 1076152 ACCTGTTTCTGGATCTTTACTTTATGGAARCAA 1076184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729918185725880