Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq9 237 2e-57 seq672 226 3e-54 seq1241 138 1e-27 seq13 132 6e-26 seq629 89.7 6e-13 seq8 89.7 6e-13 >seq9 Length=33717675 Score = 237 bits (262), Expect = 2e-57 Identities = 442/640 (69%), Gaps = 8/640 (1%) Strand=Plus/Plus Query 179350 GTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCA- 179408 ||||||| ||||| | | || ||||||||| | || || ||||||| |||| | | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTT-CTTAAGTGAT 26714245 Query 179409 GCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGA 179467 || || || || || ||| || | | | || | |||| || | ||| ||||||||||| Sbjct 26714246 GCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGA 26714304 Query 179468 GTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCT 179527 | || || |||| || ||||| ||| | || | || | || ||| || || || Sbjct 26714305 AGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACT 26714364 Query 179528 CCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGA 179586 || || || |||| || || ||||| ||| | | |||||||| |||||||| ||| Sbjct 26714365 ACATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTG- 26714422 Query 179587 TTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTG 179646 ||| | |||||| ||||| ||||| || || ||||| |||||||| || || || Sbjct 26714423 TTGAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTG 26714481 Query 179647 TTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCG 179706 | ||||| || ||||| || || ||||| |||||| || || || |||||||| | Sbjct 26714482 TATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAG 26714541 Query 179707 CGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCT 179766 | || || || | ||| | || || | ||||| || || || ||||| || ||||| | Sbjct 26714542 CAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCAT 26714601 Query 179767 TCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAG 179826 | |||||||||||||||| ||| | | || | || || | | ||||| || || | Sbjct 26714602 TTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTG 26714661 Query 179827 TTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTG 179886 || || | ||||| || | || |||||| || |||||||| || | || Sbjct 26714662 CTATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCA 26714721 Query 179887 ATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGA 179946 | | || || | ||||| |||||||| |||||||| | |||| ||| ||||| || | Sbjct 26714722 ACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAA 26714781 Query 179947 TCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTT 179986 |||| | |||| ||||| || || || ||| | ||||| Sbjct 26714782 TCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 26714821 >seq672 Length=1945142 Score = 226 bits (250), Expect = 3e-54 Identities = 506/757 (67%), Gaps = 35/757 (5%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | | || | ||||| || ||||| ||||||||| | | |||| Sbjct 1649948 TGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGCCAATTACTCT 1649889 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| | || | || |||||| | ||| ||| | || Sbjct 1649888 TTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT-----GGAAT-------TTA--ATTT 1649843 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCA-GCT 179411 |||| ||||| | | || ||||||||| | || || |||||| |||| | | || Sbjct 1649842 GGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTT-CTTAAGTGATGCA 1649784 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAGTC 179470 || || || || ||| || | | | || | |||| || | ||| ||||||||||| | Sbjct 1649783 GTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGC 1649725 Query 179471 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 179530 || || |||| || ||||| ||| | || | || | || ||| || || || || Sbjct 1649724 ACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACA 1649665 Query 179531 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTG 179589 || || |||| || || ||||| ||| | | |||||||| |||||||| ||| || Sbjct 1649664 TGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTG-TTS 1649607 Query 179590 GTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTT 179649 | |||||| ||||| ||||| || || ||||| |||||||| || || ||| | Sbjct 1649606 AATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTAT 1649547 Query 179650 TCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGG 179709 |||| || |||| || || ||||| |||||| || || || |||||||| || | Sbjct 1649546 TCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 1649487 Query 179710 CGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCC 179769 | || || | ||| | || || | ||||| || || || ||||| || ||||| || | Sbjct 1649486 CTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTC 1649427 Query 179770 ATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTA 179829 ||||||||||||||| ||| | | || | || || | | ||||| || || | || Sbjct 1649426 ATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGTGCTA 1649367 Query 179830 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATT 179889 || | ||||| || | || |||||| | |||| || |||| | Sbjct 1649366 TCATARAAAATACTTTATTTGGAGATGG-------GGAAATTCC-------GGTTTAACC 1649321 Query 179890 CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 179949 | || || | ||||| |||||||| |||||||| | |||| ||| ||||| || |||| Sbjct 1649320 CAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCT 1649261 Query 179950 TCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTT 179986 | | |||| ||||| || || || ||| | ||||| Sbjct 1649260 TTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 1649224 >seq1241 Length=4265459 Score = 138 bits (152), Expect = 1e-27 Identities = 248/356 (70%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 177891 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGT 177949 || ||||| || || ||||||| | ||| | ||| | |||||| ||||| || || | Sbjct 4250727 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 4250669 Query 177950 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 178009 || ||| | ||||| || || | || || || || || |||||||| || |||| || Sbjct 4250668 TGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4250609 Query 178010 ACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 178069 | | ||||| | ||| || || | | |||| || |||| |||| || || || Sbjct 4250608 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 4250549 Query 178070 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 178129 | | ||||| || || || |||||||| | || ||||||| ||| | || || ||||| Sbjct 4250548 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 4250489 Query 178130 TCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT--CTATGCATACATGGGACGT 178187 ||||| | || | || | |||||| | ||||| | || ||| ||| |||| ||| Sbjct 4250488 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGT 4250431 Query 178188 GAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTC 178243 |||||||||||| | ||| | ||||| ||||| ||||| ||| ||||| || Sbjct 4250430 GAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 132 bits (146), Expect = 6e-26 Identities = 248/361 (69%), Gaps = 6/361 (2%) Strand=Plus/Plus Query 177891 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGT 177949 || ||||| || || ||||||| | ||| | ||| | |||||| ||||| || || | Sbjct 21513248 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 21513306 Query 177950 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 178009 || ||| | |||| || || | || || || || || |||||||| || |||| || Sbjct 21513307 TGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 21513366 Query 178010 ACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 178069 | | ||||| | ||| || || | | |||| || |||| |||| || || || Sbjct 21513367 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 21513426 Query 178070 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 178129 | | ||||| || || || |||||||| | || ||||||| ||| | || || ||||| Sbjct 21513427 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 21513486 Query 178130 TCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT--CTATGCATACATGGGACGT 178187 ||||| | || | || | |||||| | ||||| | || ||| ||| |||| ||| Sbjct 21513487 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGT 21513544 Query 178188 GAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCT 178247 |||||||||||| | | | ||||| ||||| ||||| ||| ||||| || || Sbjct 21513545 GAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCARCT 21513604 Query 178248 C 178248 | Sbjct 21513605 C 21513605 >seq629 Length=2291386 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 178500 AACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGC 178559 || || ||||| | || || ||||| ||||| || ||||| ||||| || || ||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 178560 TACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTC 178619 || || || | |||||||||||||||||| || |||||||| | ||| | |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 178620 TT 178621 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 178500 AACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGC 178559 || || ||||| | || || ||||| ||||| || ||||| ||||| || || ||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 178560 TACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTC 178619 || || || | |||||||||||||||||| || |||||||| | ||| | |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 178620 TT 178621 || Sbjct 4092038 TT 4092039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606000123524880