Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq9 250 3e-61 seq672 246 3e-60 seq629 104 3e-17 seq8 104 3e-17 seq11 95.1 1e-14 seq12 86.0 7e-12 >seq9 Length=33717675 Score = 250 bits (276), Expect = 3e-61 Identities = 445/639 (70%), Gaps = 10/639 (2%) Strand=Plus/Plus Query 160028 TGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGT-- 160085 |||||||||||| || | || ||||||||| | || || | ||||| |||| || | Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTT-CTTA-AGTGATG 26714246 Query 160086 CAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAG 160144 ||||| |||||| ||| | | | | || | |||| || || || ||||||||||| Sbjct 26714247 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 160145 GCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTC 160204 || ||||| ||||| | ||| ||| | || | || | || |||||| ||||| Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 160205 CATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCAT 160263 ||||| || |||| ||||| || || ||| | ||||| ||||| || || || ||| | Sbjct 26714366 CATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTT 26714424 Query 160264 CGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGT 160323 | | | |||| ||||| ||||| ||||| ||||| |||||||| ||||| || Sbjct 26714425 GAAT-TGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGT-TTTGTTTCTGT 26714482 Query 160324 ATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGC 160383 |||||| || || || || |||||||| |||||||| || || || ||||| || || Sbjct 26714483 ATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGC 26714542 Query 160384 AGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTT 160443 ||| || ||| ||||| | | || | || || ||||| || ||||| || ||||| || Sbjct 26714543 AGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATT 26714602 Query 160444 CCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGT 160503 |||||||||||||||| ||| | | || | || || | | || || || || | Sbjct 26714603 TCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGC 26714662 Query 160504 TACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGA 160563 || || | || || | | || |||||| || |||||||| || | || | Sbjct 26714663 TATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAA 26714722 Query 160564 TTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGAT 160623 | || || | ||||| |||||||| |||||||| | |||| ||| ||||| || || Sbjct 26714723 CCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAAT 26714782 Query 160624 CTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTT 160662 ||| | |||| ||||| || || || ||| | ||||| Sbjct 26714783 CTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 26714821 >seq672 Length=1945142 Score = 246 bits (272), Expect = 3e-60 Identities = 517/768 (67%), Gaps = 37/768 (5%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | | || | || ||||||||||| || |||||| | Sbjct 1649958 TTTGATATTATGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGC 1649899 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 | | || |||| ||| ||| | ||| | || |||||| | |||| ||| Sbjct 1649898 CAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAA----TTTA 1649847 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 160078 | |||||||||||| || | || ||||||||| | || || ||||| ||| Sbjct 1649846 ------ATTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTT-CTT 1649794 Query 160079 ACAGCGT--CAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 160135 | || | ||||| |||||| ||| | | | | || | |||| || || || ||| Sbjct 1649793 A-AGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGG 1649736 Query 160136 GGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTT 160195 |||||||| || ||||| ||||| | ||| ||| | || | || | || |||| Sbjct 1649735 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTT 1649676 Query 160196 GTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCA 160255 || ||||| ||||| || |||| ||||| || || ||| | ||||| ||||| || || Sbjct 1649675 GTTGCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCT 1649617 Query 160256 CG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTT 160314 || ||| | | | | |||| ||||| ||||| ||||| ||||| |||||||| || Sbjct 1649616 CGATCTGTTSAAT-TGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT 1649558 Query 160315 TGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTT 160374 ||| |||||||| || || | || |||||||| ||||||| || || || || Sbjct 1649557 TGTTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTT 1649498 Query 160375 TGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCT 160434 ||| || ||||| || ||| ||||| | | || | || || ||||| || ||||| || Sbjct 1649497 TGGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACT 1649438 Query 160435 TAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCAT 160494 ||||| || |||||||||||||||| ||| | | || | || || | | || || Sbjct 1649437 AAACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTAT 1649378 Query 160495 CCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAA 160554 || || | || || | || || | | || |||||| | |||| || Sbjct 1649377 TCACGGTGCTATCATARAAAATACTTTATTTGGAGATGG-------GGAAATTCC----- 1649330 Query 160555 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 160614 |||| | | || || | ||||| |||||||| |||||||| | |||| ||| || Sbjct 1649329 --GGTTTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTG 1649272 Query 160615 GTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTT 160662 ||| || ||||| | |||| ||||| || || || ||| | ||||| Sbjct 1649271 GTCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTT 1649224 >seq629 Length=2291386 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 159030 AACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGT 159089 || || ||||||| || || ||||| |||||||| || |||||||| || || |||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 159090 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTC 159149 || || || | |||||||||||||| ||| || |||||||| | ||| || |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 159150 TT 159151 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 159030 AACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGT 159089 || || ||||||| || || ||||| |||||||| || |||||||| || || |||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 159090 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTC 159149 || || || | |||||||||||||| ||| || |||||||| | ||| || |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 159150 TT 159151 || Sbjct 4092038 TT 4092039 >seq11 Length=35299535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 202/302 (67%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 160615 GTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 160674 ||| || ||||| || |||| |||| || || | ||| | ||||| | ||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 160675 TGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCT 160734 ||| | || | ||| | |||| | ||| | | ||||| || | || || Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGGTCTGGCCTTGAACCT 68791 Query 160735 TCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGAC 160794 |||| || ||||| || ||| | || | || ||||||||| ||||||||||| Sbjct 68790 ACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAGAC 68731 Query 160795 CTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGA 160854 ||||| ||||| || || || | |||||||| ||| ||| ||| | | || || Sbjct 68730 TTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAAGA 68671 Query 160855 CCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTA 160914 || || |||| ||| |||| ||||| || || ||| | || | || ||||| ||||| Sbjct 68670 TCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCTTTA 68611 Query 160915 AT 160916 || Sbjct 68610 AT 68609 >seq12 Length=31678690 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 160769 GCAGCAGAAGATCCAGAATTT-GAGACCTTCTACACCAAGAACATCCTACTGAATGAAGG 160827 ||| | |||||||| |||||| ||||| ||||||||||| || || || | | |||||| Sbjct 15529651 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15529592 Query 160828 ACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGA 160887 | | ||| ||| | ||| || || ||||| ||||| ||| |||| ||||| ||||| Sbjct 15529591 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15529532 Query 160888 AGTT 160891 ||| Sbjct 15529531 GGTT 15529528 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 160769 GCAGCAGAAGATCCAGAATTT-GAGACCTTCTACACCAAGAACATCCTACTGAATGAAGG 160827 ||| | |||||||| |||||| ||||| ||||||||||| || || || | | |||||| Sbjct 15589922 GCAACGGAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGG 15589863 Query 160828 ACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGA 160887 | | ||| ||| | ||| || || ||||| ||||| ||| |||| ||||| ||||| Sbjct 15589862 TATTCATGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15589803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552464960694080