Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq15 134 2e-26 seq486 122 1e-22 seq9 116 5e-21 seq1241 107 3e-18 seq855 107 3e-18 >seq15 Length=47181002 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||| || | |||| | ||||||| ||| |||| ||| || Sbjct 34780773 TCCTCCTTGATCAACATAACGGGCCGTATCATTAAAAACTCTCAACATTGGAACAATGCC 34780832 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||||||| ||||||||| ||| | || || || ||| || || Sbjct 34780833 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 34780892 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || || ||| | |||||| |||||| || ||||| || Sbjct 34780893 GACACCAATTCCTCCAGCTGACTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 34780952 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||||||| ||||| || ||| || ||||| Sbjct 34780953 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 34780994 >seq486 Length=229640 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | |||| || ||| |||| ||| || Sbjct 170581 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAAAACTCGCAACATTGGAACAATGCC 170522 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||||||| ||||||||| ||| | || ||||| || | ||| Sbjct 170521 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCCCGAATGTTGTGGACAGA 170462 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| ||| | |||||| ||| || || ||||| || Sbjct 170461 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTTAAGGTATCATAAAT 170402 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||||||| ||| | || ||| || ||||| Sbjct 170401 GCCTTCAATGCTATCATCTTTCAAGCAAACAAGGAAGCAGCT 170360 >seq9 Length=33717675 Score = 116 bits (128), Expect = 5e-21 Identities = 235/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 || || |||||||| || || | |||||| |||| || | ||||| || || || Sbjct 737458 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGAAAGTC 737399 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAA 39732 ||||| ||||||| ||| |||||||| ||||||||||| || |||||| | ||||| || Sbjct 737398 AGTCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCGC-GCAAAAACTCCCAGAGAA 737340 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790 ||| || ||||| || ||||| || || | || ||| || | ||| | | Sbjct 737339 GAAAATCCCTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGAGC--CG 737282 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| || | ||||| | || |||||| || || || || || || || || Sbjct 737281 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 737222 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||||| || || || ||| ||| || | || || || | | || || ||| Sbjct 737221 TGGAAGAGGCGGTGCTTCTCGTCAGAATCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 737162 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || || |||||||| || || || ||||| || ||||| || Sbjct 737161 ATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAA 737118 >seq1241 Length=4265459 Score = 107 bits (118), Expect = 3e-18 Identities = 233/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 || || |||||||| || || | |||||| |||| || | |||||| || || || Sbjct 519775 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTC 519834 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732 ||||| ||||||| ||| |||||||| ||||||||||| || ||| ||| || || || Sbjct 519835 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAA 519893 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790 ||| || || || || ||||| || || | || ||| || | ||| | | | Sbjct 519894 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC--CG 519951 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| || | ||||| | || |||||| || || || || || || || || Sbjct 519952 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 520011 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||||| || || || || || || | || || || | | || || ||| Sbjct 520012 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 520071 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || || |||||||| ||||| || ||||| || ||||| || Sbjct 520072 ATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAA 520115 >seq855 Length=4499644 Score = 107 bits (118), Expect = 3e-18 Identities = 233/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 || || |||||||| || || | |||||| |||| || | |||||| || || || Sbjct 753881 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTC 753940 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732 ||||| ||||||| ||| |||||||| ||||||||||| || ||| ||| || || || Sbjct 753941 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAA 753999 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790 ||| || || || || ||||| || || | || ||| || | ||| | | | Sbjct 754000 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC--CG 754057 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| || | ||||| | || |||||| || || || || || || || || Sbjct 754058 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 754117 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||||| || || || || || || | || || || | | || || ||| Sbjct 754118 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 754177 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || || |||||||| ||||| || ||||| || ||||| || Sbjct 754178 ATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAA 754221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686898058463640