Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9 123 2e-23 seq1241 105 5e-18 seq855 105 5e-18 >seq9 Length=33717675 Score = 123 bits (136), Expect = 2e-23 Identities = 237/344 (69%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || ||||| || || || || || || || || || || |||||||| || || | Sbjct 737118 TTCTACGGGTTCCAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTC 737177 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA-AACAGT 44061 || ||||||||||| ||| |||||||||| || | || | ||||| || | || Sbjct 737178 GAGACGTACATCAAGGATTCTGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATC 737237 Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 |||||| | | || || | |||||||| | |||||| | ||| ||||| Sbjct 737238 CCCTGCG-TCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCTGAGTCTTT 737296 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC-AGGATCGTTTG 44180 | || ||| | || || ||||| |||||||| |||||||| || ||| |||| Sbjct 737297 CGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAAGGGATTTTCTTCTCTGGGAGTTTTTG 737356 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 | || ||||||||| |||| || || ||||| ||||| || |||| || || || ||| Sbjct 737357 C-GCGATATTTTGGCTAAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCGAACGAGC 737415 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || || || || ||||| || ||||| || || || ||| Sbjct 737416 TGATCTCACGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTG 737459 >seq1241 Length=4265459 Score = 105 bits (116), Expect = 5e-18 Identities = 285/431 (66%), Gaps = 4/431 (1%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || || ||||| |||||| || ||| ||| ||| | | | | ||||| | | Sbjct 520202 GCCTTCTTCGCTGCCTCCGACGGCATCGTCCTTGAGAATCTCGCTGGGAGGTTTATGAAG 520143 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || || | | || || || || || ||||| || || ||||| || || || Sbjct 520142 GAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATAGCCATTGAGAACATC 520083 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || || |||||||| || || | || ||||||||||| || |||||||||| Sbjct 520082 CACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCAC 520023 Query 44036 CGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || | || | ||||| || | || |||||| | | || || | |||||||| Sbjct 520022 CGCCTCTTCCACGCGATCGACACCATCCCCTGCG-TCGCGAAGAAGGCCCAGTGGGCCCT 519964 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | |||||| | || ||||| | || ||| | || || ||||| ||||| Sbjct 519963 GAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGA 519904 Query 44155 AGGCATTTTCTTTTC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 || |||||||| || ||| | ||| || ||||||||| | || || || ||||| | Sbjct 519903 GGGGATTTTCTTCTCGGGGAGTTTCTGC-GCGATATTTTGGCTTAAAAAGCGCGGTTTAA 519845 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 |||| || |||| || || || || | || || || || ||||| || ||||| | Sbjct 519844 TGCCGGGACTGACTTTCTCCAACGAACTGATCTCGCGAGACGAGGGCTTGCACTGCGACT 519785 Query 44274 TTGCTTGCTTG 44284 | || || ||| Sbjct 519784 TCGCGTGTTTG 519774 >seq855 Length=4499644 Score = 105 bits (116), Expect = 5e-18 Identities = 285/431 (66%), Gaps = 4/431 (1%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || || ||||| |||||| || ||| ||| ||| | | | | ||||| | | Sbjct 754308 GCCTTCTTCGCTGCCTCCGACGGCATCGTCCTTGAGAATCTCGCTGGGAGGTTTATGAAG 754249 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || || | | || || || || || ||||| || || ||||| || || || Sbjct 754248 GAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATAGCCATTGAGAACATC 754189 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || || |||||||| || || | || ||||||||||| || |||||||||| Sbjct 754188 CACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCAC 754129 Query 44036 CGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || | || | ||||| || | || |||||| | | || || | |||||||| Sbjct 754128 CGCCTCTTCCACGCGATCGACACCATCCCCTGCG-TCGCGAAGAAGGCCCAGTGGGCCCT 754070 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | |||||| | || ||||| | || ||| | || || ||||| ||||| Sbjct 754069 GAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGA 754010 Query 44155 AGGCATTTTCTTTTC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 || |||||||| || ||| | ||| || ||||||||| | || || || ||||| | Sbjct 754009 GGGGATTTTCTTCTCGGGGAGTTTCTGC-GCGATATTTTGGCTTAAAAAGCGCGGTTTAA 753951 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 |||| || |||| || || || || | || || || || ||||| || ||||| | Sbjct 753950 TGCCGGGACTGACTTTCTCCAACGAACTGATCTCGCGAGACGAGGGCTTGCACTGCGACT 753891 Query 44274 TTGCTTGCTTG 44284 | || || ||| Sbjct 753890 TCGCGTGTTTG 753880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397449940162255