Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 8e-16 seq777 93.3 4e-14 seq1167 91.5 1e-13 seq699 91.5 1e-13 seq12 89.7 4e-13 seq4 87.8 2e-12 seq111 82.4 6e-11 seq10 82.4 6e-11 >seq5 Length=31606955 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | ||||| || | || || || ||||| || |||||||| Sbjct 1683972 TGCCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTG 1683913 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || ||||||||||||| || |||||| | || |||||||| || || || | Sbjct 1683912 CGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGG 1683853 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | | || | ||||| | | || | Sbjct 1683852 GGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCA 1683793 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || || || |||||||||||||||||||| Sbjct 1683792 CCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATTTGCAT 1683744 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || ||||| || || ||||||||| | | |||| |||| ||| Sbjct 1684636 ACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCG 1684577 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || || | ||| || ||||| || | ||||| ||||| Sbjct 1684576 AGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGA 1684517 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | |||| ||||| | | || || || || || || | || Sbjct 1684516 ATCTTGGCCTTCACGTTGTCTATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTC 1684457 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || |||||||||||| Sbjct 1684456 CCTGTAAGGGTCTTGACGAAGATTTGCATA 1684427 >seq777 Length=131708 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || |||||||| || | |||| ||||||||||||| || |||||| | | Sbjct 69227 CTTTCTGKATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTKCCGGCGAAGA 69286 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||| ||||| || |||||||| | ||||| || || ||||||| || | | | Sbjct 69287 TGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 69346 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | || || || || || || ||||| || | || || || || |||||||| | Sbjct 69347 CGATGGTRTCGCTGCTCTCGACCTCRAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACGA 69406 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 69407 AAATCTGCAT 69416 >seq1167 Length=79491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || |||||||| || | |||| ||||||||||||| || |||||| | | Sbjct 64089 CTTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGA 64148 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||| ||||| || |||||||| | ||||| || || ||||||| || | | | Sbjct 64149 TGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 64208 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | || || || || || || ||||| || | || || || || |||||||| | Sbjct 64209 CGATGGTATCGCTGCTCTCGACCTCAAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACGA 64268 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 64269 AAATCTGCAT 64278 >seq699 Length=1873381 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||||| || | || || || || || || |||||||| Sbjct 139613 CCACCGCGAAGACGGAGCACCAAGTGGAGGGTTGACTCYTTCTGGATGTTGTAGTCTGCA 139554 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||||||||| || || ||| | || |||||||| || ||||| || Sbjct 139553 AGGGTWCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 139494 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| || | | | || | ||||| | | || || Sbjct 139493 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACC 139434 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || ||||||||||| ||||||||||| Sbjct 139433 TCAAGGGTGATGGTCTTGCCGGTAAGAGTTTTCACGAAGATTTGCAT 139387 >seq12 Length=31678690 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 |||| || || |||||||| ||| ||| || ||||||||||||| || |||||| | Sbjct 2679454 CTTTCTGGATGTTGTAGTCAGCTAGGGTTCGGC-CGTCTTCGAGCTGCTTGCCGGCGAAG 2679512 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || || ||||| || ||||| || | ||||| || || ||||||| || | | Sbjct 2679513 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 2679572 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 |||| |||||| || || || || ||||| || | || || || || |||||||| Sbjct 2679573 TCTATAGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACG 2679632 Query 27237 AAGATTTGCAT 27247 || || ||||| Sbjct 2679633 AAAATCTGCAT 2679643 >seq4 Length=23020739 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| |||||||| || ||| | | | || | || ||||||||||| || Sbjct 9341652 GTAGACTCTTTCTGAATATTATAATCGGCAAGGGTACGACCATCCTCGAGCTGTTTCCCA 9341593 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||| || ||||| || | |||||| || || ||||| |||| Sbjct 9341592 GCAAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGAATCTTAGCTTTC 9341533 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||| || | | || || || ||||| || | || || || || || Sbjct 9341532 ACGTTRTCAATAGTRTCAGAGCTCTCRACCTCCAGAGTRATYGTCTTYCCTGTYAGKGTY 9341473 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||| || |||||| Sbjct 9341472 TTCACAAAWATYTGCATA 9341455 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/209 (67%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | || || || || || || || || || | | || |||| || Sbjct 9340524 ACCAGATGGARRGTCGATTCCTTYTGGATGTTRTAATCKGCGAGRGTCCGGCCGTCYTCR 9340465 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||| || |||||| | ||||||||||| ||||| || || | ||||| ||||| | Sbjct 9340464 ARCTGCTTTCCGGCGAAKATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTATCTTGG 9340405 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | | || | || || | | || ||||| | || || | || Sbjct 9340404 ATCTTAGCCTTAACGTTGTCGATGGTATCGGAGCTCTCGACTTCCARGGTGATGGTMTTC 9340345 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||| ||||| ||||| Sbjct 9340344 CCSGTTAGGGTTTTCACRAAGATCTGCAT 9340316 >seq111 Length=1131199 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/209 (68%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | || || || || || || || || ||| | | | || |||| || Sbjct 723801 ACCAGATGGAGGGTCGATTCCTTCTGGATGTTATAATCGGCGAGGGTCCGGCCGTCCTCA 723860 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | ||||||||||| ||||| || || | ||||| ||||| | Sbjct 723861 AGCTGCTTTCCGGCGAATATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTATCTTGG 723920 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | | || | || || | | || ||||| | || || | || Sbjct 723921 ATCTTAGCCTTAACGTTGTCGATGGTATCGGAGCTCTCGACTTCCAAGGTGATGGTCTTC 723980 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||||||||| ||||| Sbjct 723981 CCSGTTAGGGTTTTCACAAAGATCTGCAT 724009 >seq10 Length=33391235 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 || || || |||||||| | | | || | ||||||||||| || || ||| | || Sbjct 31310696 TTCTGGATGTTGTAGTCTGCAAGGGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATC 31310637 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| || ||||| || | || || || || ||||||| || | | | || Sbjct 31310636 AGACGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 31310577 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | ||||| | | || || || || || || | ||||| || ||||||||||| ||| Sbjct 31310576 ATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGAGTTTTCACGAAG 31310517 Query 27240 ATTTGCAT 27247 |||||||| Sbjct 31310516 ATTTGCAT 31310509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424927921211112