Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq864 96.9 4e-15 seq15 95.1 2e-14 seq1168 93.3 5e-14 seq9 93.3 5e-14 seq778 91.5 2e-13 seq8 89.7 6e-13 seq486 86.0 8e-12 >seq864 Length=2386779 Score = 96.9 bits (106), Expect = 4e-15 Identities = 222/334 (66%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || |||| || | || ||||| | ||||| Sbjct 704321 TCAAGAATRTCTGCCCTGTTAGTCGCTGCAACCACRATRATACCAGTGTTGCCYTCAAAA 704380 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||||||| |||||||| || ||||| || || | | Sbjct 704381 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCT--CCTC 704438 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || || ||||| ||||||| || ||||| || | Sbjct 704439 CAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAG 704498 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 || ||| || ||| | | ||| ||||| ||||| | ||||| |||||||||| Sbjct 704499 GTGCATTCTCCTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACAA 704558 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGA 11780 |||| || ||||| | | | ||| || ||||| ||| | |||||| || | Sbjct 704559 ACATTTCAACAAATTCAGAACCTGAGATGGAGAAAAATGGAACACCCGCTTCACCAGCAA 704618 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || || || || |||||||| || ||||| Sbjct 704619 TTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCTGG 704652 >seq15 Length=47181002 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || ||||| || |||| |||||||||||| || | || ||| ||||| | || Sbjct 34781097 CTGAGGCCTTGGAGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTG 34781156 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| || ||||||| | |||||||| || || ||| ||| || || | | Sbjct 34781157 AGACATCAGGTGATATGTCTTGATAACAGAATCGATATCATCCTTGTGAATCCCAACAGA 34781216 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| | ||||| || || |||||| | |||| | || || || | || | Sbjct 34781217 AACCCTCATTAGCATGTGTTGAGGTCTTTCCACAACTTTGCC-TTGAACCTTTAAGAGGT 34781275 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | ||||||| || |||| ||||||||| || | ||| ||||||| Sbjct 34781276 AAGACCTCTCAAGAGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 34781324 >seq1168 Length=760787 Score = 93.3 bits (102), Expect = 5e-14 Identities = 221/328 (67%), Gaps = 22/328 (7%) Strand=Plus/Minus Query 9221 GACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGT 9280 ||| || ||| |||| || || |||| ||||| || |||||| |||||| | Sbjct 41781 GACGCCGTTCCACCCCCGATCCCCTTACGCCGTCTCGAAATGTGCGGCGCATTGGTACAC 41722 Query 9281 CAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGA 9340 | || ||||| ||| | ||||||||||| |||||| ||| || || |||||||| || Sbjct 41721 CGTGAACTACCGTGAGGCCTACGGACTGTTCGCGTGCAACGGCATTCTGTTCAACCACGA 41662 Query 9341 ATCACCGAGACGAGGTGCAGA-CTTTGTGACCATGAAGATTA------CCGAGGGT---A 9390 || ||| | || || | ||| ||||||||| |||||| | ||| |||| | Sbjct 41661 GTCGCCGCGGCG-GGGGGAGAGTTTTGTGACCCGGAAGATCACCCGGGCCGTGGGTCGGA 41603 Query 9391 TCAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGA 9450 ||||| | || || | ||| |||| ||||| || | | ||| || Sbjct 41602 TCAAAGAGGGATTGCAGAG---CAAGCTGTTC------TTGGGAAATCTGCAGGCGTCGA 41552 Query 9451 GAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGG 9510 | || |||||| ||| |||||| || || || |||||| | ||||| || || || | Sbjct 41551 GGGACTGGGGTTTCGCCGGGGACTACGTGGAGGCGATGTGGATGATGCTGCAGCAGGA-G 41493 Query 9511 AAGCC-GACGAATATGTAGTAGCAACGG 9537 ||||| ||||| || || || || |||| Sbjct 41492 AAGCCGGACGACTACGTGGTGGCGACGG 41465 >seq9 Length=33717675 Score = 93.3 bits (102), Expect = 5e-14 Identities = 219/332 (66%), Gaps = 0/332 (0%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | | ||||| || |||| || | || ||||| | ||||| Sbjct 26639021 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACRATRATACCAGTGTTGCCYTCAAAA 26639080 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||||||| |||||||| || ||||| || || | Sbjct 26639081 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCTCCWCCA 26639140 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| | | |||| || || || ||||| ||||||| || ||||| || ||| Sbjct 26639141 ATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAGGT 26639200 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || ||| | | ||| ||||| ||||| | ||||| |||||||||||| Sbjct 26639201 GCATTCTCCTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACAAAC 26639260 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATG 11782 || || ||||| | | | ||| || ||||| ||| | |||||| || || Sbjct 26639261 ATTTCAACAAAYTCAGAACCTGAGATGGAGAAAAATGGAACACCMGCTTCACCAGCAATT 26639320 Query 11783 GCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || || || |||||||| || || || Sbjct 26639321 GCCTTTGCTAGCAGAGTCTTTCCGGTTCCYGG 26639352 >seq778 Length=878642 Score = 91.5 bits (100), Expect = 2e-13 Identities = 220/328 (67%), Gaps = 22/328 (7%) Strand=Plus/Plus Query 9221 GACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGT 9280 ||| || ||| |||| || || |||| ||||| || |||||| |||||| | Sbjct 152086 GACGCCGTTCCACCCCCGATCCCCTTACGCCGTCTCGAAATGTGCGGCGCATTGGTACAC 152145 Query 9281 CAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGA 9340 | || ||||| ||| | ||||||||||| |||||| ||| || || |||||||| || Sbjct 152146 CGTGAACTACCGTGAGGCCTACGGACTGTTCGCGTGCAACGGCATTCTGTTCAACCACGA 152205 Query 9341 ATCACCGAGACGAGGTGCAGA-CTTTGTGACCATGAAGATTA------CCGAGGGT---A 9390 || ||| | || || | ||| ||||||||| |||||| | ||| |||| | Sbjct 152206 GTCGCCGCGGCG-GGGGGAGAGTTTTGTGACCCGGAAGATCACCCGGGCCGTGGGTCGGA 152264 Query 9391 TCAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGA 9450 ||||| | || || | ||| |||| ||||| || | | ||| || Sbjct 152265 TCAAAGAGGGATTGCAGAG---CAAGCTGTTC------TTGGGAAATCTGCAGGCGTCGA 152315 Query 9451 GAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGG 9510 | || |||||| || |||||| || || || |||||| | ||||| || || || | Sbjct 152316 GGGACTGGGGTTTYGCCGGGGACTACGTGGAGGCGATGTGGATGATGCTGCAGCAGGA-G 152374 Query 9511 AAGCC-GACGAATATGTAGTAGCAACGG 9537 ||||| ||||| || || || || |||| Sbjct 152375 AAGCCGGACGACTACGTGGTGGCGACGG 152402 >seq8 Length=29603939 Score = 89.7 bits (98), Expect = 6e-13 Identities = 212/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || || | |||||||| ||||| || ||||||||||| | | Sbjct 359224 AAACCCATCCATCTCCGTCAGCAGCTGATTAATAGTTTGCTCCCTCTCATCATT--CCCG 359167 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | ||| || || | | ||| | ||||||||||| |||||||||||||| ||||| Sbjct 359166 CCGCCCATYCCCGCGCCTCTCTGCCTCCCCACCGCATCTATCTCATCAATGAACACAATG 359107 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | ||| | || || | || || || || || ||||| || Sbjct 359106 CACGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGYACTCTCGACGCCCCCACTCC 359048 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||| |||||| || | | || | |||| || || || | || || Sbjct 359047 CACAAACAACTCCACGAACTCGGAAGCCGCGCACGAGAAAAACGGCGTCCCAGCCTCKCC 358988 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 || | || || || || |||||||| || ||||| || ||| | | ||| || Sbjct 358987 GGCCACRGCGCGAGCCAGAAGGGTCTTSCCGGTACCAGGTGGRCCCACCAAAAGACATCC 358928 Query 11836 TCGGGGGATCTTGGCACC 11853 | ||||| ||||| || Sbjct 358927 TTTTGGGATTTTGGCRCC 358910 >seq486 Length=229640 Score = 86.0 bits (94), Expect = 8e-12 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || |||| |||||||||||| || | || ||| ||||| | ||| Sbjct 170241 TGAGGCCTTGGGGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGTTGA 170182 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | |||||| | ||||||||||| || | | ||| || || | | Sbjct 170181 GACATCAAATGATATGTCCTGATAACAGAATCAATATCGTYCTTGTGAATCCCAACAGAA 170122 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| | ||||| || || |||| | | |||| | || || || | || || Sbjct 170121 ACCCTCATTAGCATGTGTTGAGGCCTTTCTACAACTTTGCC-TTGAACCTTTAACAGGTA 170063 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | ||||||| || |||| ||||||||| || | ||| ||||||| Sbjct 170062 AGACCTCTCAAGAGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 170015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628022179149600