Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1241 145 9e-30 seq9 129 7e-25 seq855 111 2e-19 seq778 104 3e-17 seq1168 102 1e-16 seq864 89.7 6e-13 >seq1241 Length=4265459 Score = 145 bits (160), Expect = 9e-30 Identities = 381/570 (67%), Gaps = 19/570 (3%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || |||||||| |||||||| |||||||| | || |||||| |||||| Sbjct 519492 ATACTCGCCGACGCGCTTCTCRAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 519551 Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841 |||| || ||||||| ||| | || |||| | | |||| | || Sbjct 519552 CCAATCGAACGGGTTCTGGACATTG---TACATCTTGCCGTATC-CCAACGAGCCC-AGC 519606 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901 || ||||||| ||| |||| |||||| |||| ||| ||||||||| | || Sbjct 519607 AGCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATACCCACCAGC 519666 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 ||| || |||||||| | | |||| || |||| || ||||| || | ||| ||||| Sbjct 519667 GCACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATC 519726 Query 129962 GCGTGAATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAA 130019 | | || ||| || ||| | | || | || | | | || |||| | | Sbjct 519727 GACTTAACCCGATCCTCGCTCAGCT-TCTTCCTCAGCAGCGAGTACAGCAAACACG-CGA 519784 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| | |||||||| || ||||| ||||| || ||||| ||| || |||| Sbjct 519785 AGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAGTCCCGGCA 519844 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 | | ||| ||||| || | ||| || ||||| || || || |||||||| ||||||| Sbjct 519845 TTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCT 519904 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACT 130199 |||| || || || || | || ||||| || || || ||| || | ||| Sbjct 519905 CCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCATC 519961 Query 130200 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 130259 ||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 519962 TCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGC 520021 Query 130260 CCTTCTTTTCTGATGGA-TCTTTGATGTAC 130288 | ||| || | ||| || ||||||||| Sbjct 520022 GGTGCTTCTC-GTCGGAGTCCTTGATGTAC 520050 >seq9 Length=33717675 Score = 129 bits (142), Expect = 7e-25 Identities = 376/569 (66%), Gaps = 19/569 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || || |||||||||||||| |||||||| | | |||||| |||||| Sbjct 737740 TACTCGCCGACGCGTTTCTCGAAGAAGTTGGTCTTCCCCTGGAGGCTGATCAGCTCCATC 737681 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTG-CTGGCACTCCAATCTGTTTGAGGAGACG 129846 |||| || ||||||| ||| | ||| | | | |||| | || || || Sbjct 737680 CAATCGAAAGGGTTCTGGACGTTGTACATTTTCCCGTATCCCAACGCGCCC-AGCAGCCG 737622 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||| ||||| |||| || |||||| || | ||| || Sbjct 737621 ATCTGCGACGAACTCGATGTAGGTGCTCATCAGATCACCGTTCATCCCCACCAGGGCGCA 737562 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||||||| | | |||| ||||||| || ||||| || | ||| || || | | Sbjct 737561 AGGCAGCGCGTCGCACACGAACTCCTTCTCGATCTCCACCGCGTTCCGAACTATCGACTT 737502 Query 129967 AATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAAACT 130022 || ||| || ||| || ||| | ||| || | | |||| | || | Sbjct 737501 TATCCGATCCTCGCTCAG--CTTCTGC-CTCAGTAGCGAGTACAGCAAACACG-CGAAGT 737446 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | |||||||| || ||||| || || |||||||| ||| || ||||| | Sbjct 737445 CGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGAAAGTCAGTCCCGGCATTA 737386 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 ||| ||||| || | ||| || ||||| ||||| ||||||||||| ||||| |||| Sbjct 737385 AACCGCGCTTTTTTAGCCAAAATATCGCGCAAAAACTCCCAGAGAAGAAAATCCCTTCCA 737326 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCA 130202 | || || || || | || ||||| || || || || || | ||| ||| Sbjct 737325 CGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGA---GCCGTCGATCCATCTCA 737269 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA---GTT 130259 |||||||| ||||| ||| ||| || |||| ||| | |||||| | |||| | | Sbjct 737268 GGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGT 737209 Query 130260 CCTTCTTTTCTGATGGATCTTTGATGTAC 130288 ||||| || || ||| ||||||||| Sbjct 737208 GCTTCTCGTCAGA---ATCCTTGATGTAC 737183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 172/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| ||||| | ||| ||||| || | || | || || || | | ||||| Sbjct 26639020 GTCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACRATRATACCAGTGTTGCCYTCAAA 26639079 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214 |||||||| || ||||| || ||||| | ||||||||| | |||||| ||| | Sbjct 26639080 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCTCCWCC 26639139 Query 14215 ACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG 14274 | || | | | |||| || || |||||||||||||| | || || || || || Sbjct 26639140 AATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAGG 26639199 Query 14275 TTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACA 14332 | ||| || ||| |||| ||| | ||| || |||| ||||| ||||| ||| Sbjct 26639200 TGCATTCTCCTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACA 26639257 Query 14333 AACATCTCCACAAA 14346 ||||| || ||||| Sbjct 26639258 AACATTTCAACAAA 26639271 >seq855 Length=4499644 Score = 111 bits (122), Expect = 2e-19 Identities = 180/256 (70%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || ||||| ||||| || ||||| ||| || ||||| | ||| ||||| Sbjct 753905 CCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTT 753964 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | ||| || ||||| || || || |||||||| ||||||||||| || || || Sbjct 753965 TTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAG 754024 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || ||||| || || || ||| || | ||| ||| |||||||| Sbjct 754025 GCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCATCTCAGGGCCCACTGG 754081 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGAT 130273 ||||| ||| ||| || |||| ||| | |||||| | ||||| | ||| || | Sbjct 754082 GCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTC-GTC 754140 Query 130274 GGA-TCTTTGATGTAC 130288 ||| || ||||||||| Sbjct 754141 GGAGTCCTTGATGTAC 754156 >seq778 Length=878642 Score = 104 bits (114), Expect = 3e-17 Identities = 248/373 (66%), Gaps = 6/373 (2%) Strand=Plus/Plus Query 11861 GACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGT 11920 |||||| ||| | || |||||| || | |||||| || |||||| |||||| | Sbjct 152086 GACGCCGTTCCACCCCCGATCCCCTTACGCCGTCTCGAAATGTGCGGCGCATTGGTACAC 152145 Query 11921 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGA 11980 ||| ||||| || |||| || || || |||||| || ||||| ||||||||||| Sbjct 152146 CGTGAACTACCGTGAGGCCTACGGACTGTTCGCGTGCAACGGCATTCTGTTCAACCACGA 152205 Query 11981 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 12040 ||| || || || || | ||| ||||| |||||||||| | | | || Sbjct 152206 GTCGCCGCGGCGGGGGGAGAGTTTTGTGACCCGGAAGATCACCCGGGCCGTGGGTCGGAT 152265 Query 12041 CGTGGCGGG--TG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 12097 | | ||| || |||| || | | ||||| || || | || ||||||||| Sbjct 152266 CAAAGAGGGATTGCAGAGCAAGCTGTT---CTTGGGAAATCTGCAGGCGTCGAGGGACTG 152322 Query 12098 GGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 12157 ||| ||| |||||| || || || |||||| | | || || || || || |||| Sbjct 152323 GGGTTTYGCCGGGGACTACGTGGAGGCGATGTGGATGATGCTGCAGCAGGAGAAGCCGGA 152382 Query 12158 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTT 12217 ||| || || || ||||||| |||| | ||| | || ||||||| | ||| | | || Sbjct 152383 CGACTACGTGGTGGCGACGGAGGAGTCGCACACGGTGGAGGAGTTCCTGGAGGTATCGTT 152442 Query 12218 TAGGGAAGTTGGA 12230 | || | || ||| Sbjct 152443 TGGGTACGTCGGA 152455 >seq1168 Length=760787 Score = 102 bits (112), Expect = 1e-16 Identities = 248/373 (66%), Gaps = 6/373 (2%) Strand=Plus/Minus Query 11861 GACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGT 11920 |||||| ||| | || |||||| || | |||||| || |||||| |||||| | Sbjct 41781 GACGCCGTTCCACCCCCGATCCCCTTACGCCGTCTCGAAATGTGCGGCGCATTGGTACAC 41722 Query 11921 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGA 11980 ||| ||||| || |||| || || || |||||| || ||||| ||||||||||| Sbjct 41721 CGTGAACTACCGTGAGGCCTACGGACTGTTCGCGTGCAACGGCATTCTGTTCAACCACGA 41662 Query 11981 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 12040 ||| || || || || | ||| ||||| |||||||||| | | | || Sbjct 41661 GTCGCCGCGGCGGGGGGAGAGTTTTGTGACCCGGAAGATCACCCGGGCCGTGGGTCGGAT 41602 Query 12041 CGTGGCGGG--TG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 12097 | | ||| || |||| || | | ||||| || || | || ||||||||| Sbjct 41601 CAAAGAGGGATTGCAGAGCAAGCTGTT---CTTGGGAAATCTGCAGGCGTCGAGGGACTG 41545 Query 12098 GGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 12157 ||| ||| |||||| || || || |||||| | | || || || || || |||| Sbjct 41544 GGGTTTCGCCGGGGACTACGTGGAGGCGATGTGGATGATGCTGCAGCAGGAGAAGCCGGA 41485 Query 12158 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTT 12217 ||| || || || ||||||| |||| | ||| | || ||||||| | ||| | | || Sbjct 41484 CGACTACGTGGTGGCGACGGAGGAGTCGCACACGGTGGAGGAGTTCCTGGAGGTATCGTT 41425 Query 12218 TAGGGAAGTTGGA 12230 | || | || ||| Sbjct 41424 TGGGTACGTCGGA 41412 >seq864 Length=2386779 Score = 89.7 bits (98), Expect = 6e-13 Identities = 191/285 (67%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 ||||| || || || | | | ||| |||||| || || | ||| ||||| || Sbjct 704291 TCAAACCGGCCWGGCCTCARTAAGGCAGAGTCAAGAATRTCTGCCCTGTTAGTCGCTGCA 704350 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 | || | || || || | | ||||| |||||||| || ||||| || ||||| | | Sbjct 704351 ACCACRATRATACCAGTGTTGCCYTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGG 704410 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGG 14243 |||||||| | |||||| ||| | | | | | || | | | |||| || || | Sbjct 704411 GTTTGTTCCCTTTCATCGTTCCCT--CCTCCAATTCCAGTTCCTCTTTGCCGTCCAACAG 704468 Query 14244 CGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--AAAGAT 14301 ||||||||||||| | || || || || ||| ||| || ||| |||| ||| | Sbjct 704469 CGTCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGGC--CTTCTTAAAAAG 704526 Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| || |||| ||||| ||||| |||||||| || ||||| Sbjct 704527 ATCACGAACTCGGGAAGCACCAACACCAACAAACATTTCAACAAA 704571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425529219560