Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq864 118 1e-21 seq9 116 4e-21 seq1241 100 3e-16 seq855 100 3e-16 seq8 89.7 6e-13 >seq864 Length=2386779 Score = 118 bits (130), Expect = 1e-21 Identities = 347/528 (66%), Gaps = 14/528 (3%) Strand=Plus/Plus Query 9368 TCATTAAGGAGATTTGCGAGTTCAGCGCCAGAGAACCCCGTCGTTTGCTTAGCGATACTC 9427 ||||||||||| |||||||| || || ||| ||| || | || | || | | ||| Sbjct 704132 TCATTAAGGAGGTTTGCGAGATCWGCCCCACTGAAGCCRG--GTGTYCTCATGGCTACAA 704189 Query 9428 C-TCAACTTGA-CACCTTCAGCCAACTTCTTATCACGCGCGTGAACACCCAAGATCTTCT 9485 | |||| | || | || | |||||||||| | || ||||| ||||||| Sbjct 704190 CATCAAGRGAAACASTTCCATCAAACTTCTTATTGCTAGCATGAACCTTTAAGATCTCTG 704249 Query 9486 CGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAA 9545 | ||| || | ||||| | | || | || | ||||| || || || | | Sbjct 704250 TTCTTCCTCGWATGTCTGGGACATCAACAGACACCTGCCTGTCAAACCGGCCWGGCCTCA 704309 Query 9546 GGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTT 9605 | || ||||| || || | | || ||||| || | || | ||||| || | Sbjct 704310 RTAAGGCAGAGTCAAGAATRTCTGCCCTGTTAGTCGCTGCAACCACRATRATACCAGTGT 704369 Query 9606 CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCAT 9665 |||||||||||||| ||||||||||| || |||| |||||||||| |||||| | Sbjct 704370 TGCCYTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGT 704429 Query 9666 TCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAA 9723 || || | | | | |||| | | |||| ||| || || ||||| ||||||| || Sbjct 704430 TCCCT--CCTCCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAA 704487 Query 9724 GACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCG 9781 || ||||| ||| ||| || | | | |||| ||| ||||| || || || || Sbjct 704488 TACAATGCAAGGTGCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGCA 704545 Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATT 9840 || |||||||||||||| || ||||| | | | | | || | || || || ||| Sbjct 704546 CCAACACCAACAAACATTTCAACAAATTCAGAACCTG-AGATGGAGAAAAATGGAACACC 704604 Query 9841 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | |||||| ||||| || || || |||||||| || || ||||| Sbjct 704605 CGCTTCACCAGCAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCTGG 704652 >seq9 Length=33717675 Score = 116 bits (128), Expect = 4e-21 Identities = 229/335 (68%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| ||||| | | || ||||| || | || | ||||| || | |||||| Sbjct 26639021 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACRATRATACCAGTGTTGCCYTCAAAA 26639080 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||| || |||| |||||||||| |||||| ||| || | Sbjct 26639081 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCTCCWCCA 26639140 Query 9677 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 |||| | | |||| ||| || || ||||| ||||||| || || ||||| ||| Sbjct 26639141 ATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAGGT 26639200 Query 9737 TGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 9794 ||| || | | | |||| ||| ||||| || || || || || |||||||||| Sbjct 26639201 GCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACAA 26639258 Query 9795 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9853 |||| || ||||| | | | | | || | || || || ||| | |||||| ||| Sbjct 26639259 ACATTTCAACAAAYTCAGAACCTG-AGATGGAGAAAAATGGAACACCMGCTTCACCAGCA 26639317 Query 9854 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || || || |||||||| || || || || Sbjct 26639318 ATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCYGG 26639352 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || |||||| || | || ||||| || || || || || ||||||||||| Sbjct 737292 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAAGGGATTTTCTTCTCTGGGAGT 737351 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || ||||| || | |||||| || ||||| ||| | ||||| || || ||||| ||| Sbjct 737352 TTTTGCGCGATATTTTGGCTAAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCGAAC 737411 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 ||||| ||||| || |||||||| Sbjct 737412 GAGCTGATCTCACGAGACGAGGG 737434 >seq1241 Length=4265459 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 519941 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 519882 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 519881 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 519822 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 || || ||||| || |||||||| Sbjct 519821 GAACTGATCTCGCGAGACGAGGG 519799 >seq855 Length=4499644 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 754047 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 753988 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 753987 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 753928 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 || || ||||| || |||||||| Sbjct 753927 GAACTGATCTCGCGAGACGAGGG 753905 >seq8 Length=29603939 Score = 89.7 bits (98), Expect = 6e-13 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| |||| || || ||||||||||| |||| ||||||||| | | Sbjct 359224 AAACCCATCCATCTCCGTCAGCAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--G 359167 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | ||| || || | | ||| | ||||| ||||| |||||||||||||| || ||| Sbjct 359166 CCGCCCATYCCCGCGCCTCTCTGCCTCCCCACCGCATCTATCTCATCAATGAACACAATG 359107 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 || || ||||| | || || || | ||||| || | | || ||||| | Sbjct 359106 CACGG--CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGYACTCTCGACGCCCCCACTC 359049 Query 9789 CAACAAACATCTCCACAAA 9807 | ||||||| |||||| || Sbjct 359048 CCACAAACAACTCCACGAA 359030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251679259240