Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9 208 8e-49 seq1241 170 2e-37 seq855 152 6e-32 seq439 98.7 1e-15 >seq9 Length=33717675 Score = 208 bits (230), Expect = 8e-49 Identities = 583/871 (67%), Gaps = 28/871 (3%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || | |||||| || | |||| |||| ||||| ||| | || |||||| Sbjct 736884 TTCCCGATCCAGTACCCTGAAATCTGGGAAATGTACAAGAAGGCGGAAGCCTCCTTCTGG 736943 Query 59622 TCCGTCGAGGAGATTGACCTC-GCCGGAGACCTGAAGGATTGGGACAAGCTCAATT--AC 59678 ||| ||||||| | ||||| ||| | ||| | | ||||| ||||| || || Sbjct 736944 ACCGCCGAGGAGGTCGACCTTTGCCAG-GACGTCCGCCACTGGGA--AGCTCTATCCGAC 737000 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 | |||| ||| ||| || | |||| ||||||||||| || ||||||||||| Sbjct 737001 GGCGAGAGGCACTTCGTCTCGCACATCCTCGCCTTCTTCGCCGCTTCCGATGGAATTGTC 737060 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 |||| ||| | | | | || ||||| |||||| | ||||||||||| | ||| Sbjct 737061 CTGGAGAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 737120 Query 59799 TACGCGTATCAG-TCGTTCAA-CGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 |||| || ||| ||| ||| |||| ||||||||||||| |||| ||| | ||| Sbjct 737121 TACGGGTTCCAGATCG--CAATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCG 737178 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCC 59915 | | || |||||||| | || |||||| | || |||| || || || || ||| Sbjct 737179 AGACGTACATCAAGGATTCTGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCC 737238 Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCAT 59973 || || || | || || | |||||| || ||||| || || ||| || | Sbjct 737239 CCTGC-GTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCTGAG--TCTT 737295 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 | || | || || | || ||||| ||||||||||| || ||||||||||| || | Sbjct 737296 TCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAAGGGATTTTCTTCTCTGGGAGTTTTT 737355 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 | || || || ||||| |||||||| || | |||||||| |||| |||||| ||||||| Sbjct 737356 GCGCGATATTTTGGCTAAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCGAACGAGC 737415 Query 60094 TGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTATTCACACCTA 60152 |||| || || ||||||||| | || || || || ||| ||| || || | || Sbjct 737416 TGATCTCACGAGACGAGGGCTTGCACTGCGACTTCGC-GTGTTTGCTGTACTCGCTACTG 737474 Query 60153 TTGGAAAAATGCCCTTCCAAGGAT---ATTCACAAGATTGTTCAGTGGGCTTGTGAAG-T 60208 | | || | | ||||| || | ||| |||| | || ||| || | Sbjct 737475 AGGCAGAA---GCTGAGCGAGGATCGGATAAAGTCGATAGTTCGGAACGC-GGTGGAGAT 737530 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 |||| |||||| | || ||||| || ||| || | || ||| ||| || Sbjct 737531 CGAGAAGGAGTTCGTGTGCGACGCGCTGCCTTGCGCCCTGGTGGGGATGAACGGTGATCT 737590 Query 60269 AATGACGCA-GTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGAC 60327 |||| ||| ||||| |||| ||||| || || || ||| | ||| ||| | || Sbjct 737591 GATGA-GCACCTACATCGAGTTCGTCGCAGATCGGCTGCTGGGCGCGTTGGGATACGGGA 737649 Query 60328 CAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGA 60387 ||| ||| ||| | ||||||||||| ||||||||| ||| | | ||||||| Sbjct 737650 AAATGTACAACGTCCAGAACCCTTTCGATTGGATGGAGCTGATCAGCCTCCAGGGGAAGA 737709 Query 60388 CCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||| ||||| || ||||| || || Sbjct 737710 CCAACTTCTTCGAGAAACGCGTCGGCGAGTA 737740 >seq1241 Length=4265459 Score = 170 bits (188), Expect = 2e-37 Identities = 574/872 (66%), Gaps = 28/872 (3%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| ||||| || | || |||||| Sbjct 520349 TTTCCGATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCTGG 520290 Query 59622 TCCGTCGAGGAGATTGACCTC-GCCGGAGACCTGAAGGATTGGGACAAGCTCAATT--AC 59678 ||| ||||||| | ||||| ||| | ||| | | ||||| || | || || Sbjct 520289 ACCGCCGAGGAGGTCGACCTATGCCAG-GACATCCGCCACTGGGAG--GCCCTATCCGAC 520233 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 | |||| ||| ||| || | | || ||||||||||| || || || || || Sbjct 520232 GGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTC 520173 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | || ||| | | || ||| ||||| |||||| | ||||||||||| | ||| Sbjct 520172 CTTGAGAATCTCGCTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 520113 Query 59799 TACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 |||| || ||| || ||| ||||||||||||| |||| ||| | |||| Sbjct 520112 TACGGGTTCCAGATAGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAG 520053 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCC 59917 | || ||||||| | || |||||| | || |||| || || || || ||||| Sbjct 520052 ACGTACATCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCC 519993 Query 59918 CGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTT 59975 || || | || || | |||||| || ||||| || || ||| || || Sbjct 519992 TGC-GTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAG--TCTTTC 519936 Query 59976 GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT 60035 || | || || | || ||||| |||||||| || || |||||||| || ||||| Sbjct 519935 GCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGC 519876 Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTG 60095 || || || ||||| |||||||| || | |||||||| |||| |||||||||||| ||| Sbjct 519875 GCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAACTG 519816 Query 60096 ATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTATTCACACCTATT 60154 || || || ||||||||| | || || || || ||| ||| || || | || Sbjct 519815 ATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGC-GTGTTTGCTGTACTCGCTGCT-GA 519758 Query 60155 GGAAAAATGCCCTTCCAAGGAT---ATTCACAAGATTGTTCAGTGGGCTTGTGAAG-TGG 60210 |||| || | | ||||| || | ||| || | | || ||| || | | Sbjct 519757 GGAAGAA--GCTGAGCGAGGATCGGGTTAAGTCGATCGTACGGAACGC-GGTGGAGATCG 519701 Query 60211 AGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAA 60270 |||| |||||| | || ||||| || || || | |||||| || || || Sbjct 519700 AGAGGGAGTTCGTGTGCGACGCGCTGCCGTGTGCGCTGGTGGGTATGAAC---GGCGATC 519644 Query 60271 TGA--CGCA-GTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGAC 60327 ||| ||| |||||| |||| || ||||| || || ||| | ||| ||| | || Sbjct 519643 TGATGGGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGGATACGGCA 519584 Query 60328 CAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGA 60387 || ||| || | ||||| ||||| ||||||||| ||| || | ||||||| Sbjct 519583 AGATGTACAATGTCCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAAGA 519524 Query 60388 CCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 |||||||||| |||||||| ||||| || ||| Sbjct 519523 CCAACTTCTTYGAGAAGCGCGTCGGCGAGTAT 519492 >seq855 Length=4499644 Score = 152 bits (168), Expect = 6e-32 Identities = 375/558 (67%), Gaps = 12/558 (2%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| ||||| || | || |||||| Sbjct 754455 TTTCCGATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCTGG 754396 Query 59622 TCCGTCGAGGAGATTGACCTC-GCCGGAGACCTGAAGGATTGGGACAAGCTCAATT--AC 59678 ||| ||||||| | ||||| ||| | ||| | | ||||| || | || || Sbjct 754395 ACCGCCGAGGAGGTCGACCTATGCCAG-GACATCCGCCACTGGGAG--GCCCTATCCGAC 754339 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 | |||| ||| ||| || | | || ||||||||||| || || || || || Sbjct 754338 GGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTC 754279 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | || ||| | | || ||| ||||| |||||| | ||||||||||| | ||| Sbjct 754278 CTTGAGAATCTCGCTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 754219 Query 59799 TACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 |||| || ||| || ||| ||||||||||||| |||| ||| | |||| Sbjct 754218 TACGGGTTCCAGATAGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAG 754159 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCC 59917 | || ||||||| | || |||||| | || |||| || || || || ||||| Sbjct 754158 ACGTACATCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCC 754099 Query 59918 CGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTT 59975 || || | || || | |||||| || ||||| || || ||| || || Sbjct 754098 TGC-GTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAG--TCTTTC 754042 Query 59976 GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT 60035 || | || || | || ||||| |||||||| || || |||||||| || ||||| Sbjct 754041 GCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGC 753982 Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTG 60095 || || || ||||| |||||||| || | |||||||| |||| |||||||||||| ||| Sbjct 753981 GCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAACTG 753922 Query 60096 ATTTCCCGGGACGAGGGC 60113 || || || ||||||||| Sbjct 753921 ATCTCGCGAGACGAGGGC 753904 >seq439 Length=4537371 Score = 98.7 bits (108), Expect = 1e-15 Identities = 224/329 (68%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || | |||||| || | |||| |||| ||||| ||| | || |||||| Sbjct 763514 TTCCCGATCCAGTACCCTGAAATCTGGGAAATGTACAAGAAGGCGGAAGCCTCCTTCTGG 763455 Query 59622 TCCGTCGAGGAGATTGACCTC-GCCGGAGACCTGAAGGATTGGGACAAGCTCAATT--AC 59678 | | ||||||| | ||||| ||| | ||| | | ||||| ||||| || || Sbjct 763454 ACAGCCGAGGAGGTCGACCTTTGCCAG-GACGTCCGCCACTGGGA--AGCTCTATCCGAC 763398 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 | |||| ||| || || | |||| ||||||||||| || ||||||||||| Sbjct 763397 GGCGAGAGGCACTTTGTCTCGCACATCCTCGCCTTCTTCGCCGCTTCCGATGGAATTGTC 763338 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 |||| ||| | | | | || ||||| |||||| | ||||||||||| | ||| Sbjct 763337 CTGGAGAATCTTGCCGGAAGGTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 763278 Query 59799 TACGCGTATCAG-TCGTTCAA-CGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 |||| || ||| ||| ||| |||| ||||||||||||| |||| ||| | ||| Sbjct 763277 TACGGGTTCCAGATCG--CAATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCG 763220 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 | | || |||||||| | || |||||| Sbjct 763219 AGACGTACATCAAGGATTCTGACGAGAAG 763191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548516222443440