Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1241 131 2e-25 seq855 118 1e-21 seq119 89.7 6e-13 seq5 89.7 6e-13 seq840 87.8 2e-12 seq325 87.8 2e-12 seq16 87.8 2e-12 seq13 87.8 2e-12 seq274 86.0 7e-12 seq17 86.0 7e-12 seq10 86.0 7e-12 seq799 82.4 8e-11 seq379 82.4 8e-11 seq7 82.4 8e-11 >seq1241 Length=4265459 Score = 131 bits (144), Expect = 2e-25 Identities = 478/729 (66%), Gaps = 30/729 (4%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || ||||| ||||| || || |||||||||||||| | || ||| |||||| Sbjct 519492 ATACTCGCCGACGCGCTTCTCRAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 519551 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATA--GGCTTCTCCCCAAACTGTGCCATGAGG 74579 ||| ||||| ||||||| || ||| || | | | |||| ||| ||| || Sbjct 519552 CCAATCGAACGGGTTCTGGACATTGTACATCTTGCCGTATCCC--AACGAGCCCAGCAGC 519609 Query 74580 CGATCCGCCACAAATTGAATGTAC-TGCG--TCATTTCTCCCGCATCCATGCCGATGAGT 74636 ||||||||||| || | |||||| ||| ||| || || | ||| || | || Sbjct 519610 CGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCG---TTCATACCCACCAGC 519666 Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATT--GGACAA 74694 |||||||| || ||| | ||||| ||||| | ||| | | | || | || | Sbjct 519667 GCACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCC--ACCGCGTTCCGTACGA 519724 Query 74695 TCTTGTGAATGTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGAGTAAAGCGT-CACGGC 74752 || | || | | | || ||| | |||||| | ||||| ||| |||| | Sbjct 519725 TCGACTTAACC-CGATCCTCGCTCAGCTTCTTCCTCAGCAGCGAGTACAGCAAACACG-C 519782 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 || || ||| |||| || |||| |||| ||| || || || | || || || Sbjct 519783 GAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAGTCCCGG 519842 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| | || ||||| || | |||||| || || ||||| || |||||| || || Sbjct 519843 CATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCC 519902 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC-ATCCA 74929 || || || |||||||| || | || | |||||| | ||||| ||| ||||| Sbjct 519903 CTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGAC---TCGGAGCCGTCGATCCA 519959 Query 74930 AGTCTGAGCCCATTCAGCTTT--TCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAA 74986 || | ||||| | || || ||| ||| |||||| | || |||||||| ||||| Sbjct 519960 TCTCAGGGCCCACTGGGCCTTCTTCGC--GAC-GCAGGGGATGGTGTCGATCGCGTGGAA 520016 Query 74987 GAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTC 75046 ||||| |||||| |||| ||||||| | | | || | | || |||| |||| Sbjct 520017 GAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATCTC 520076 Query 75047 CGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTG 75106 || || || ||| || |||| || ||||||| | || ||||| || | ||| Sbjct 520077 GGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCTG 520136 Query 75107 TACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166 || ||||| ||| || ||| |||||| | |||||||||||| ||||| ||||| Sbjct 520137 GACCTCCTTCATAAACCTCCCAGCGAGATTCTCAAGGACGATGCCGTCGGAGGCAGCGAA 520196 Query 75167 AAAAGCCAG 75175 || || || Sbjct 520197 GAAGGCGAG 520205 >seq855 Length=4499644 Score = 118 bits (130), Expect = 1e-21 Identities = 282/419 (67%), Gaps = 12/419 (3%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| |||| || |||| |||| ||| || || || | || || ||||| | || Sbjct 753899 TGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAGTCCCGGCATTAAACCG 753958 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 ||||| || | |||||| || || ||||| || |||||| || || || || || Sbjct 753959 CGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTCCACGCAG 754018 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC-ATCCAAGTCTGAGCC 74939 |||||||| || | || | |||||| | ||||| ||| ||||| || | ||| Sbjct 754019 GCAAAGGCCACGATTCGCTCCGCGAAAGAC---TCGGAGCCGTCGATCCATCTCAGGGCC 754075 Query 74940 CATTCAGCTTT--TCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCC 74996 || | || || ||| ||| |||||| | || |||||||| |||||||||| | Sbjct 754076 CACTGGGCCTTCTTCGC--GAC-GCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGC 754132 Query 74997 TTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATC 75056 ||||| |||| ||||||| | | | || | | || |||| |||| || || || Sbjct 754133 TTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATCTCGGAGTGGATG 754192 Query 75057 GACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTT 75116 ||| || |||| || ||||||| | || ||||| || | ||| || ||||| Sbjct 754193 TTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTC 754252 Query 75117 GAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAG 75175 ||| || ||| |||||| | |||||||||||| ||||| ||||| || || || Sbjct 754253 ATAAACCTCCCAGCGAGATTCTCAAGGACGATGCCGTCGGAGGCAGCGAAGAAGGCGAG 754311 >seq119 Length=218597 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 70746 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 70687 Query 79683 TTGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 70686 CTGAGCTATGAAAGCA 70671 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 142303 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 142362 Query 79683 TTGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 142363 CTGAGCTATGAAAGCA 142378 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 69887 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 69828 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 69827 TGAGCTATGAAAGC 69814 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 143161 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 143220 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 143221 TGAGCTATGAAAGC 143234 >seq5 Length=31606955 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2700682 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 2700623 Query 79683 TTGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 2700622 CTGAGCTATGAAAGCA 2700607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2792671 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2792730 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 2792731 TGAGCTATGAAAGCA 2792745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2793514 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 2793573 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2793574 CTGAGCTATGAAAGC 2793588 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2699823 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2699764 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2699763 TGAGCTATGAAAGC 2699750 >seq840 Length=6641225 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2410220 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2410161 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 2410160 TGAGCTATGAAAGCA 2410146 >seq325 Length=8951201 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4060447 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4060506 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 4060507 TGAGCTATGAAAGCA 4060521 >seq16 Length=20664393 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2621307 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2621366 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 2621367 TGAGCTATGAAAGCA 2621381 >seq13 Length=34719086 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4056521 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4056580 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 4056581 TGAGCTATGAAAGCA 4056595 >seq274 Length=1548089 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 911955 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 912014 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 912015 TGAGCTATGAAAGC 912028 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 911691 TGCTTTTATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 911750 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 911751 TGAGCTATGAAAGCA 911765 >seq17 Length=24923725 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1920077 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1920136 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1920137 TGAGCTATGAAAGC 1920150 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 16025886 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16025945 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 16025946 TGAGCTATGAAAGC 16025959 >seq10 Length=33391235 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 30368536 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 30368477 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 30368476 TGAGCTATGAAAGC 30368463 >seq799 Length=9239260 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1504944 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1505003 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 1505004 TGAGCTACGAGAGCA 1505018 >seq379 Length=9387712 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1517765 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1517706 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 1517705 TGAGCTACGAGAGCA 1517691 >seq7 Length=26383534 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 11168634 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 11168693 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 11168694 TGAGCTACGAGAGCA 11168708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207442909800