Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq1241 134 2e-26 seq13 129 7e-25 >seq1241 Length=4265459 Score = 134 bits (148), Expect = 2e-26 Identities = 251/365 (69%), Gaps = 8/365 (2%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| | | | | || || | | ||| Sbjct 4250735 TTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTC-TGTA 4250677 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||||| ||||| || | ||||| || |||||||| ||||| || Sbjct 4250676 TTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTT 4250617 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | |||||| |||| ||||||| ||| || || | | || | | || | || Sbjct 4250616 TCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCA 4250557 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| ||||| || |||||||| | | ||||| |||||| | ||| Sbjct 4250556 GCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATAC 4250497 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---AC 176442 ||||| || || || | || |||| | |||||| | | ||| | ||||| || Sbjct 4250496 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTAC 4250440 Query 176443 ATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCA 176502 |||| || | ||||||||||||| | || || || || |||||||| ||||||| Sbjct 4250439 GTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCA 4250380 Query 176503 TACTC 176507 || || Sbjct 4250379 TATTC 4250375 >seq13 Length=34719086 Score = 129 bits (142), Expect = 7e-25 Identities = 249/365 (68%), Gaps = 8/365 (2%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| | | | | || || | | ||| Sbjct 21513240 TTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTC-TGTA 21513298 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||| | ||||| || | ||||| || |||||||| ||||| || Sbjct 21513299 TTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTT 21513358 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | |||||| |||| ||||||| ||| || || | | || | | || | || Sbjct 21513359 TCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCA 21513418 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| ||||| || |||||||| | | ||||| |||||| | ||| Sbjct 21513419 GCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATAC 21513478 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---AC 176442 ||||| || || || | || |||| | |||||| | | ||| | ||||| || Sbjct 21513479 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTAC 21513535 Query 176443 ATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCA 176502 |||| || | ||||||||||||| || || || || |||||||| ||||||| Sbjct 21513536 GTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCA 21513595 Query 176503 TACTC 176507 || || Sbjct 21513596 TATTC 21513600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603484962856320