Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq111 105 5e-18 seq96 87.8 1e-12 seq1167 86.0 4e-12 >seq111 Length=1131199 Score = 105 bits (116), Expect = 5e-18 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| || || || ||||| ||||| | || ||||| || || Sbjct 723325 ATGCAAATTTTCGTGAAGACCCTAACAGGGAAGACAATTACCCTGGAGGTCGAGAGTTCC 723266 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | || || ||| |||||| ||||| || ||| |||| || | Sbjct 723265 GATACGATTGAYAAC--GTGAAAGCAAAAATTCAAGACAAGGAGGGTATTCCTCCAGATC 723208 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATT 27964 |||| | || || |||||||| || |||||||| || | |||| || || | |||| Sbjct 723207 AGCAGAGATTGATCTTTGCCGGTAAGCAATTGGAAGATG---GCAGGACTCTGGCGGATT 723151 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| |||||||||||||| | || ||| | || || Sbjct 723150 ACAACATCCAAAAGGAGTCAACTTTGCATTTGGTCCTTCGATTGAGGGGTGG 723099 >seq96 Length=1311920 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || || || || || | || || |||||| || Sbjct 515281 ATGCAGATCTTTGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCC 515340 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| || || ||||| |||||| |||| || | Sbjct 515341 GACACCATTGACAAT--GTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGACC 515398 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||| || || | || |||| |||| | | |||| |||| Sbjct 515399 AGCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACA 515458 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | || | ||| | ||| | ||||| || Sbjct 515459 ACATCCAGAAGGAGTCCACCCTCCACCTAGTTCTCCGTCTCCGTGGTGG 515507 >seq1167 Length=79491 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| |||||||| || || ||||| || || |||| ||||| ||| Sbjct 64281 AAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTTGAGGTCGAGAGC 64222 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| | || ||||| ||||| || || ||||| || || ||||| || Sbjct 64221 AGCGATACCATCGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGG 64164 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || |||||||| || | || |||| |||| | || | || | Sbjct 64163 ACCAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACCCTGGCTGACT 64104 Query 27965 ACAACATCCAAAAAG 27979 |||||||||| |||| Sbjct 64103 ACAACATCCAGAAAG 64089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355856974321677