Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq96 116 3e-21 seq111 107 1e-18 seq931 105 5e-18 seq317 95.1 8e-15 seq12 95.1 8e-15 seq104 93.3 3e-14 seq777 89.7 3e-13 seq5 89.7 3e-13 seq275 84.2 1e-11 seq4 84.2 1e-11 seq1167 82.4 5e-11 >seq96 Length=1311920 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || ||||| || ||||| ||||| ||||| | | Sbjct 515281 ATGCAGATCTTTGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCC 515340 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | ||||| |||||| | || ||||| || Sbjct 515341 GACACCATTGACAATGTCAAAGCCAAGA-TCCAAGACAAGGAAGGTATTCCCCCAGACCA 515399 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | |||||||||||||| || || || |||| ||||| | | ||| ||||| Sbjct 515400 GCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 515459 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || |||||||| | || ||||| Sbjct 515460 CATCCAGAAGGAGTCCACCCTCCACCTAGTT 515490 >seq111 Length=1131199 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||| || || || || || || || || || || | Sbjct 723325 ATGCAAATTTTCGTGAAGACCCTAACAGGGAAGACAATTACCCTGGAGGTCGAGAGTTCC 723266 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| ||||||| ||||| || ||| | || |||||||| Sbjct 723265 GATACGATTGAYAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATTCCTCCAGATCAG 723206 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||| || ||| ||||||| | | ||| | | ||||||||| Sbjct 723205 CAGAGATTGATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTCTGGCGGATTACAAC 723146 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| ||||| || || ||||| || Sbjct 723145 ATCCAAAAGGAGTCAACTTTGCATTTGGT 723117 Score = 84.2 bits (92), Expect = 1e-11 Identities = 130/197 (66%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || ||||| ||||| || || || | | Sbjct 722869 ATGCAGATWTTTGTGAAGACMCTRACAGGRAAGACGATYACTCTGGAGGTYGAGAGCTCT 722810 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | ||| || ||| ||||| || ||| | || || || || Sbjct 722809 GAYACTATTGAYAACGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCGGAYCAG 722750 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || || | || || | | || | | ||||| || Sbjct 722749 CAGAGATTGATCTTTGCTGGGAARCARYTSGARGATGGYMGKACYCTKGCSGATTAYAAT 722690 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 722689 ATYCAGAARGAGTCTAC 722673 >seq931 Length=1020267 Score = 105 bits (116), Expect = 5e-18 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 506752 ATGCAGATCTTYGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 506693 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || | | ||||| || || | || ||||| || Sbjct 506692 GACACTATTGATAATGTCAAAGCCAAGA-TCCAAGACAAGGAGGGCATTCCCCCAGACCA 506634 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| ||||| || || || || | ||||| | | ||| ||||| Sbjct 506633 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAA 506574 Query 23790 CATACAAAAAGAGTCCAC 23807 |||||| || |||||||| Sbjct 506573 CATACARAAGGAGTCCAC 506556 >seq317 Length=1923123 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||||| ||||| || || || |||||||| || || | | Sbjct 1310852 ATGCAGATTTTTGTCAAAACCCTAACGGGGAAGACAATMACTCTCGAGGTCGAGAGCTCT 1310793 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | || || || || | || ||||| || Sbjct 1310792 GATACCATCGATAATGTGAAGGCCAAGA-TCCAGGATAAGGAGGGAATCCCACCAGACCA 1310734 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || ||| |||| |||| | | ||||| | |||||||| Sbjct 1310733 GCAGAGATTGATTTTCGCTGGTAAGCAATTGGAGGACGGAAGGACTTTGGCGGATTACAA 1310674 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| ||||| || || || || || Sbjct 1310673 CATCCAAAAGGAGTCTACTTTGCACTTGGT 1310644 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 23600 AATTACTTAAA--ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGA 23657 |||| || ||| |||||||| ||||| |||||||| || || || || ||||||||||| Sbjct 1311549 AATTTCTGAAACCATGCAGATCTTCGTGAAAACCCTSACCGGCAAGACCATCACTCTCGA 1311490 Query 23658 AGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 || || ||||||| | || | | || || || ||||| || || | Sbjct 1311489 GGTYGAGAGTTCGGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCAT 1311430 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || || || || ||||| || || || ||||| || || || || |||| || || | Sbjct 1311429 TCCTCCCGACCAGCAGCGGTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACCCT 1311370 Query 23778 AGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || || || || || | ||| | || | ||||| | ||||| Sbjct 1311369 AGCGGATTACAATATCCAGAAGGAATCGACGCTCCATCTGGTGCTTCGGTTGAGGGGAGG 1311310 >seq12 Length=31678690 Score = 95.1 bits (104), Expect = 8e-15 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| || || || || ||||||||||| || || || Sbjct 2679643 ATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTCGAGAGCAGC 2679584 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | || || ||||| || || | || || || || Sbjct 2679583 GACACTATAGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 2679525 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || || ||||||| || || ||| || ||||| Sbjct 2679524 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGAACCCTAGCTGACTACAA 2679465 Query 23790 CATACAAAAAG 23800 ||| || |||| Sbjct 2679464 CATCCAGAAAG 2679454 >seq104 Length=1555027 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||||| ||||| || || || |||||||| || || | | Sbjct 784233 ATGCAGATTTTTGTCAAAACCCTAACGGGGAAGACAATAACTCTCGAGGTCGAGAGCTCT 784174 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | || || || || | || ||||| || Sbjct 784173 GATACCATCGATAATGTGAAGGCCAAGA-TCCAGGATAAGGAGGGAATCCCACCAGACCA 784115 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || ||| |||| |||| | | ||||| | |||||||| Sbjct 784114 GCAGAGATTGATTTTCGCTGGTAAGCAATTGGAGGACGGAAGGACTTTGGCGGATTACAA 784055 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| ||||| || || || || || Sbjct 784054 CATCCAAAAGGAGTCTACTTTGCACTTGGT 784025 Score = 84.2 bits (92), Expect = 1e-11 Identities = 162/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 23600 AATTACTTAAA--ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGA 23657 |||| || ||| |||||||| ||| | |||||||| || || || || ||||||||||| Sbjct 784929 AATTTCTGAAACCATGCAGATCTTCKTGAAAACCCTSACCGGCAAGACCATCACTCTCGA 784870 Query 23658 AGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 || || ||||||| | || | | || || || ||||| || || | Sbjct 784869 GGTYGAGAGTTCGGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCAT 784810 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || || || || ||||| || || || ||||| || || || || |||| || || | Sbjct 784809 TCCTCCCGACCAGCAGCGGTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACCCT 784750 Query 23778 AGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || || || || || | ||| | || | ||||| | ||||| Sbjct 784749 AGCGGATTACAATATCCAGAAGGAATCGACGCTCCATCTGGTGCTTCGGTTGAGGGGAGG 784690 >seq777 Length=131708 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 || || |||||||||||||| |||||||| || || || || |||||||| || || || Sbjct 69422 CTRAAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTYGAGGTCGAG 69363 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 || || || | || ||| | || | || || ||||| || || | ||||| Sbjct 69362 AGCAGCGAYACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCGCC 69304 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 || || ||||| | || || ||||| || || || ||||||| ||||| | | || Sbjct 69303 GGACCAGCAGCGCCTCATCTTCGCCGGMAAGCAGCTCGAAGACGGCCGCACCCTGGCTGA 69244 Query 23784 TTACAACATACAAAAAG 23800 |||||||| || |||| Sbjct 69243 CTACAACATMCAGAAAG 69227 >seq5 Length=31606955 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| ||||| || ||||| || || || || || | Sbjct 1683744 ATGCAAATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAGTCTTCT 1683803 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || ||||| || Sbjct 1683804 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCAGACCAG 1683863 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || || ||||||| || || | | || |||||| Sbjct 1683864 CAGCGTCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCGCAGACTACAAC 1683923 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 1683924 ATCCAAAAGGAGTCAAC 1683940 >seq275 Length=2000977 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | |||||||| || ||||| || || || || || Sbjct 275704 ATGCAGATTTTCGTCAAGACCTTGACGGGAAAGACCATCACCCTGGAGGTCGAGAGTTCG 275645 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| || || | || ||||| || Sbjct 275644 GACACCATTGACAATGTCAAGGC-CAAGATCCAAGACAAGGAGGGGATCCCACCAGACCA 275586 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || || || | |||||| | | || ||||| Sbjct 275585 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACTCTGGCGGACTACAA 275526 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 275525 CATCCAGAAGGAGTCAAC 275508 >seq4 Length=23020739 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/197 (68%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || || || || || || ||||| || || || | | Sbjct 9341456 ATGCARATWTTTGTGAARACMCTRACAGGRAAGACRATYACTCTGGAGGTYGAGAGCTCT 9341515 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | ||| || ||| ||||| || ||| | || || || || Sbjct 9341516 GAYACTATTGAYAACGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCGGACCAG 9341575 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || ||||| || || || | || || | | |||||| || Sbjct 9341576 CAGAGATTGATCTTTGCTGGGAAACAGCTCGAGGATGGTCGTACCCTTGCCGATTATAAT 9341635 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 9341636 ATTCAGAAAGAGTCTAC 9341652 >seq1167 Length=79491 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 || || |||||||||||||| |||||||| || || || || |||||||| || || || Sbjct 64284 CTAAAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTTGAGGTCGAG 64225 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 || || || | || ||| | || | || || ||||| || || | ||||| Sbjct 64224 AGCAGCGATACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCGCC 64166 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 || || ||||| | || || ||||| || || || ||||||| ||||| | | || Sbjct 64165 GGACCAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACCCTGGCTGA 64106 Query 23784 TTACAACATACAAAAAG 23800 |||||||| || |||| Sbjct 64105 CTACAACATCCAGAAAG 64089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004446515508