Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9 122 7e-23 seq1241 120 3e-22 seq855 120 3e-22 >seq9 Length=33717675 Score = 122 bits (134), Expect = 7e-23 Identities = 241/349 (69%), Gaps = 11/349 (3%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 |||||||| || || || ||||| || ||||||| ||||| ||||| || || || Sbjct 737458 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGAAAGTC 737399 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | ||| ||||||||||| | |||||| ||||||||||| ||| ||| |||||| ||| Sbjct 737398 AGTCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCGCGCAAAAACTCCCAGAGAAG 737339 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || || ||||| ||| |||||| || || | ||| | |||| || || | | | Sbjct 737338 AAAATCCCTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CT--CAGAGCCG 737282 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | |||||| | | ||||| | || || ||| ||||| || || |||| || ||| Sbjct 737281 TCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 737222 Query 4785 TTAAATA--ATTTACTT-TTTTCA-AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 | || | | ||| | ||| ||| |||| || || || || | || ||||| Sbjct 737221 TGGAAGAGGCGGTGCTTCTCGTCAGAAT---CCTTG-ATGTACGTCTCGAGAAGGAGGCT 737166 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAG 4889 ||||| || || || || || || || || ||||| || ||||| ||| Sbjct 737165 GTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAAG 737117 >seq1241 Length=4265459 Score = 120 bits (132), Expect = 3e-22 Identities = 237/346 (68%), Gaps = 5/346 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 |||||||| || || || ||||| || ||||||| || | ||||||||||| || || || Sbjct 519775 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTC-GCGAGATCAGTTCGTTGGAGAAAGT 519833 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 | ||| ||||||||||| | |||||||||||||||||| ||| || ||| || || Sbjct 519834 CAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAA 519893 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||| || || || ||| |||||| || || | ||| | |||| || || | | | Sbjct 519894 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CT--CGGAGCC 519950 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | |||||| | | ||||| | || || ||| ||||| || || |||| || || Sbjct 519951 GTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGC 520010 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || || | || || | ||| | || || || || | || ||||| || Sbjct 520011 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 520070 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAG 4889 ||| || || || || || || || || ||||| || ||||| ||| Sbjct 520071 CATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAG 520116 >seq855 Length=4499644 Score = 120 bits (132), Expect = 3e-22 Identities = 237/346 (68%), Gaps = 5/346 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 |||||||| || || || ||||| || ||||||| || | ||||||||||| || || || Sbjct 753881 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTC-GCGAGATCAGTTCGTTGGAGAAAGT 753939 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 | ||| ||||||||||| | |||||||||||||||||| ||| || ||| || || Sbjct 753940 CAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAA 753999 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||| || || || ||| |||||| || || | ||| | |||| || || | | | Sbjct 754000 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CT--CGGAGCC 754056 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | |||||| | | ||||| | || || ||| ||||| || || |||| || || Sbjct 754057 GTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGC 754116 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || || | || || | ||| | || || || || | || ||||| || Sbjct 754117 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 754176 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAG 4889 ||| || || || || || || || || ||||| || ||||| ||| Sbjct 754177 CATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAG 754222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427043088961583