Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15 129 8e-25 seq486 114 2e-20 seq9 91.5 2e-13 seq1241 89.7 7e-13 seq855 89.7 7e-13 seq16 87.8 2e-12 seq13 87.8 2e-12 >seq15 Length=47181002 Score = 129 bits (142), Expect = 8e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | |||| |||||||||||||||||| ||| || Sbjct 34780774 CCTCCTTGATCAACATAACGGGCCGTATCATTAAAAACTCTCAACATTGGAACAATGCCA 34780833 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || ||||||||||||||| ||||||||| || | || || || ||| || || Sbjct 34780834 TTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGAG 34780893 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || ||| || | ||| || |||||| ||||| || || Sbjct 34780894 ACACCAATTCCTCCAGCTGACTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAATG 34780953 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || || ||||| ||||| || ||| || ||||| Sbjct 34780954 CCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 34780994 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||||||||||| | || || ||| ||||||||| || ||||| ||| ||| || Sbjct 34780283 CTCTCTTTCATATCGGGTGTACAGCTGTTCAAATTTTTCACCCCAGCAATCTGACAAACC 34780342 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || | ||||| || || | ||||||||| ||||||| | ||||| || ||| || Sbjct 34780343 TGGAGACTCATTAGGACAAAACAATGACCAACTGCCATCTTTTTGAACTCTTTCCATGAA 34780402 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| || ||| ||| ||||| |||| || ||||||||| Sbjct 34780403 GAGATCAGGCACCCAAAGTGCATAAAAAAGATCACGGGCTCGATGTTCTTC 34780453 >seq486 Length=229640 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||||||||||| | || || ||| ||||||| | || ||||| ||| ||| || Sbjct 171030 CTCTCTTTCATATCGGGTGTACAGCTGTTCAAAATTTTCACCCCAGCAATCTGACAAACC 170971 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 ||| | ||||| || || | ||||||||| | ||||||| | ||||| || ||| || Sbjct 170970 TGGGGACTCATTAGGACAAAACAATGACCAATTTCCATCTTTTTGAACTCTTTCCATGAA 170911 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| || ||| ||| ||||| |||| || |||||||| Sbjct 170910 GAGATCAGGCACCCAAAGTGCATAAAAAAGATCACGGGCTCGGTGTTCTTC 170860 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || || | ||| |||||| ||||||||||| ||| || Sbjct 170580 CCTCCTTGATCAACATAACGAGCAGTATCATTGAAAACTCGCAACATTGGAACAATGCCA 170521 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || ||||||||||||||| ||||||||| || | || ||||| || | || Sbjct 170520 TTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCCCGAATGTTGTGGACAGAG 170461 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || ||| || ||||| || || Sbjct 170460 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTTAAGGTATCATAAATG 170401 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || || ||||| ||| | || ||| || ||||| Sbjct 170400 CCTTCAATGCTATCATCTTTCAAGCAAACAAGGAAGCAGCT 170360 >seq9 Length=33717675 Score = 91.5 bits (100), Expect = 2e-13 Identities = 252/384 (66%), Gaps = 2/384 (1%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || || ||||||| || || ||||| ||||||||||| | ||| Sbjct 737413 TCGTTCGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCG-CGCA 737355 Query 48243 AAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA 48301 ||| | ||||| ||||| || ||||| ||| ||||| || | || ||| || | Sbjct 737354 AAAACTCCCAGAGAAGAAAATCCCTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAA 737295 Query 48302 ACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCAT 48361 | | | || ||||| | | ||||| | ||||||||| || || || || Sbjct 737294 AGACTCAGAGCCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGAT 737235 Query 48362 TGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTAT 48421 || || || || | ||||| || || || | ||| || | ||| || || | Sbjct 737234 GGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTCAGAATCCTTGATGTACGTCTCGAG 737175 Query 48422 TAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481 | || || ||||| |||||||| || || || ||||| ||||| || ||||| || Sbjct 737174 AAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAAGGC 737115 Query 48482 TCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTAT 48541 | || || | || ||| |||||| | || | | | || | |||||| || || Sbjct 737114 GCGGGCCTCGGCGACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCCAGGACAAT 737055 Query 48542 TCCATCACTAGCAGCAAAAAATGC 48565 |||||| ||| || || || || Sbjct 737054 TCCATCGGAAGCGGCGAAGAAGGC 737031 >seq1241 Length=4265459 Score = 89.7 bits (98), Expect = 7e-13 Identities = 261/399 (65%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| || || || || || | || || |||| || | |||||| || || || Sbjct 519775 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTC 519834 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||||| || || ||||| ||||||||||| || |||| || || ||| Sbjct 519835 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAG 519894 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA--ACT-GGCTTCGTTG 48314 || || || || ||| ||||| || | || ||| || | ||| || ||| | Sbjct 519895 AAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGCCGTCG 519954 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 ||||| | | ||||| | ||||||||| || || || || || || || || Sbjct 519955 ---ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 520011 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 | ||||| || || || | | || || | ||| || || | | || || ||| Sbjct 520012 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 520071 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 || |||||||| || || ||||| || ||||| || ||||| || | || || | | Sbjct 520072 ATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCG 520131 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCA 48533 | ||| |||||| | ||| | |||| | ||||||| Sbjct 520132 ACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTCTCA 520170 >seq855 Length=4499644 Score = 89.7 bits (98), Expect = 7e-13 Identities = 261/399 (65%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| || || || || || | || || |||| || | |||||| || || || Sbjct 753881 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTC 753940 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||||| || || ||||| ||||||||||| || |||| || || ||| Sbjct 753941 AGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAG 754000 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA--ACT-GGCTTCGTTG 48314 || || || || ||| ||||| || | || ||| || | ||| || ||| | Sbjct 754001 AAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGCCGTCG 754060 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 ||||| | | ||||| | ||||||||| || || || || || || || || Sbjct 754061 ---ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCG 754117 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 | ||||| || || || | | || || | ||| || || | | || || ||| Sbjct 754118 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTAC 754177 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 || |||||||| || || ||||| || ||||| || ||||| || | || || | | Sbjct 754178 ATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCG 754237 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCA 48533 | ||| |||||| | ||| | |||| | ||||||| Sbjct 754238 ACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTCTCA 754276 >seq16 Length=20664393 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||||||||| |||||||| ||||||||| || | ||||| || ||||| | Sbjct 13874191 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 13874250 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGC 48238 |||||||||||||| | ||||| ||||| ||||| || Sbjct 13874251 CCGGGCATTAGTCCCCTCTTTTTAAGCCAGAATATGGC 13874288 >seq13 Length=34719086 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||||||||| |||||||| ||||||||| || | ||||| || ||||| | Sbjct 17417189 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 17417248 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGC 48238 |||||||||||||| | ||||| ||||| ||||| || Sbjct 17417249 CCGGGCATTAGTCCCCTCTTTTTAAGCCAGAATATGGC 17417286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694657937116640