Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15 141 1e-28 seq486 123 4e-23 seq16 87.8 3e-12 seq13 87.8 3e-12 seq9 87.8 3e-12 >seq15 Length=47181002 Score = 141 bits (156), Expect = 1e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||| || | |||| |||||||||||||||||| |||||| Sbjct 34780774 CCTCCTTGATCAACATAACGGGCCGTATCATTAAAAACTCTCAACATTGGAACAATGCCA 34780833 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||||||| ||||||||| || ||||| || ||| || || Sbjct 34780834 TTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGAG 34780893 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || || ||| | |||||| |||||| || ||||| ||| Sbjct 34780894 ACACCAATTCCTCCAGCTGACTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAATG 34780953 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || |||||||| ||||| || ||| || ||||| Sbjct 34780954 CCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 34780994 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||||||||||| | || || | | ||||||||| || ||||| ||| |||||| Sbjct 34780283 CTCTCTTTCATATCGGGTGTACAGCTGTTCAAATTTTTCACCCCAGCAATCTGACAAACC 34780342 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| | ||||| ||||| | ||||||||| ||||||| | ||| | || ||| || Sbjct 34780343 TGGAGACTCATTAGGACAAAACAATGACCAACTGCCATCTTTTTGAACTCTTTCCATGAA 34780402 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | ||| || ||| ||| ||||| |||| || | ||||||| Sbjct 34780403 GAGATCAGGCACCCAAAGTGCATAAAAAAGATCACGGGCTCGATGTTCTTC 34780453 >seq486 Length=229640 Score = 123 bits (136), Expect = 4e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | ||| |||||| ||||||||||| |||||| Sbjct 170580 CCTCCTTGATCAACATAACGAGCAGTATCATTGAAAACTCGCAACATTGGAACAATGCCA 170521 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||||||| ||||||||| || || ||||| || | ||| Sbjct 170520 TTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCCCGAATGTTGTGGACAGAG 170461 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| ||| || || ||||| ||| Sbjct 170460 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTTAAGGTATCATAAATG 170401 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || |||||||| ||| | || ||| || ||||| Sbjct 170400 CCTTCAATGCTATCATCTTTCAAGCAAACAAGGAAGCAGCT 170360 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||||||||||| | || || | | ||||||| | || ||||| ||| |||||| Sbjct 171030 CTCTCTTTCATATCGGGTGTACAGCTGTTCAAAATTTTCACCCCAGCAATCTGACAAACC 170971 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || | ||||| ||||| | ||||||||| | ||||||| | ||| | || ||| || Sbjct 170970 TGGGGACTCATTAGGACAAAACAATGACCAATTTCCATCTTTTTGAACTCTTTCCATGAA 170911 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | ||| || ||| ||| ||||| |||| || ||||||| Sbjct 170910 GAGATCAGGCACCCAAAGTGCATAAAAAAGATCACGGGCTCGGTGTTCTTC 170860 >seq16 Length=20664393 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||||||||| ||||| || ||||||||| || | ||||| || ||||| | | Sbjct 13874191 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 13874250 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 || ||||||||||| | |||||| ||||| ||||| || Sbjct 13874251 CCGGGCATTAGTCCCCTCTTTTTAAGCCAGAATATGGC 13874288 >seq13 Length=34719086 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||||||||| ||||| || ||||||||| || | ||||| || ||||| | | Sbjct 17417189 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 17417248 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 || ||||||||||| | |||||| ||||| ||||| || Sbjct 17417249 CCGGGCATTAGTCCCCTCTTTTTAAGCCAGAATATGGC 17417286 >seq9 Length=33717675 Score = 87.8 bits (96), Expect = 3e-12 Identities = 226/342 (66%), Gaps = 2/342 (1%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| || || || || || | ||| || |||| || | ||||| || || || Sbjct 737458 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGAAAGTC 737399 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAA 46745 || || ||||||| || |||||||| ||||||||||| | ||| ||| | ||||| || Sbjct 737398 AGTCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCG-CGCAAAAACTCCCAGAGAA 737340 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG 46805 ||| || ||||| || || || || || | || ||| || || || | Sbjct 737339 GAAAATCCCTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGAGCCGTC 737280 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 ||||| || | ||||| | ||||| ||| || || || || || || || || | Sbjct 737279 GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTG 737220 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 ||||| || || || ||| ||| || | || || || | | || || ||||| Sbjct 737219 GAAGAGGCGGTGCTTCTCGTCAGAATCCTTGATGTACGTCTCGAGAAGGAGGCTGTACAT 737160 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 || || || ||||| || || || ||||| || ||||| || Sbjct 737159 CTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAA 737118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712923251488320