Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq9 208 9e-49 seq672 176 6e-39 seq1241 156 5e-33 seq13 149 8e-31 seq1081 84.2 3e-11 >seq9 Length=33717675 Score = 208 bits (230), Expect = 9e-49 Identities = 433/638 (68%), Gaps = 6/638 (1%) Strand=Plus/Plus Query 186090 TGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCA 186149 ||||||||||| | || || ||| || | || || |||| || | | | ||| Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATGCA 26714248 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAGTC 186208 || || ||||| ||| | | | | || | |||| || | ||| ||||||||||| | Sbjct 26714249 GTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGC 26714307 Query 186209 TCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCA 186268 ||||||||| | | || |||| ||| | || | || | || |||||| || || || Sbjct 26714308 ACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACA 26714367 Query 186269 CGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAG 186327 || || || | || |||||||| ||| | || || ||||| | ||| ||| || | Sbjct 26714368 TGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCT-GTTG 26714425 Query 186328 GTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTAT 186387 | | || | ||||| ||||| || || ||||| || ||||| |||||| ||||| Sbjct 26714426 AATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGT-TTTGTTTCTGTAT 26714484 Query 186388 TCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAG 186447 |||| || || || | || ||||| |||||||| || || ||||| || |||| Sbjct 26714485 TCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAG 26714544 Query 186448 CAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCC 186507 | || ||| ||||| | | || | || || || || || ||||| | || ||||| | Sbjct 26714545 CTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTC 26714604 Query 186508 ACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTA 186567 | |||||||| || | || | | || | |||| || | | || || || |||| || Sbjct 26714605 ATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGCTA 26714664 Query 186568 CTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATA 186627 || |||||||| | | || |||||| || ||||| |||||| | ||| | Sbjct 26714665 TCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAACC 26714724 Query 186628 CGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCT 186687 | || |||| |||||||| ||||| |||||||| | ||| || ||||| || |||| Sbjct 26714725 CAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCT 26714784 Query 186688 TCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTC 186725 | | |||| ||| |||||| |||||| | |||||| Sbjct 26714785 TTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 176 bits (194), Expect = 6e-39 Identities = 360/537 (67%), Gaps = 17/537 (3%) Strand=Plus/Minus Query 186190 TACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCT 186249 |||| ||||||||||| | ||||||||| | | || |||| ||| | || | || | Sbjct 1649743 TACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTAT 1649684 Query 186250 GGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTG 186309 || |||||| || || || || || || | || |||||||| ||| | || || |||| Sbjct 1649683 AGACTTTTGTTGCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTG 1649625 Query 186310 AAATCAGTCG-TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATC 186368 | | ||| ||| || | | || | ||||| ||||| || || ||||| || Sbjct 1649624 AGCTTGCTCGATCT-GTTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATT 1649566 Query 186369 GCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCT 186428 ||||| |||||| ||||||||| || || | | || ||||| |||||||| || Sbjct 1649565 GCTGTTTTTGTTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCA 1649506 Query 186429 CCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAAC 186488 || ||||| || ||||| || ||| ||||| | | || | || || || || || Sbjct 1649505 CCTAGTTTTGGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAAT 1649446 Query 186489 TGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTG 186548 ||||| | || ||||| || |||||||| || | || | | || | |||| || | Sbjct 1649445 TGGACACTAAACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTA 1649386 Query 186549 TCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAAC 186608 | || || || |||| || || |||||||| | | || |||||| ||| Sbjct 1649385 TGCGCTATTCACGGTGCTATCATARAAAATACTTTATTTGGAGATGGGGAA--------- 1649335 Query 186609 ACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAAC 186668 |||| || | | || |||| |||||||| ||||| |||||||| | ||| Sbjct 1649334 --ATTC---CGGTTTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAAC 1649280 Query 186669 AGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTC 186725 || ||||| || ||||| | |||| ||| |||||| |||||| | |||||| Sbjct 1649279 CRCTTTTGGTCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 156 bits (172), Expect = 5e-33 Identities = 266/383 (69%), Gaps = 2/383 (1%) Strand=Plus/Minus Query 183207 GATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTGATGATTCCAAC 183266 ||| ||||||| | | || | || || | || |||||||| ||||||| | || Sbjct 4250758 GATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTAC 4250699 Query 183267 TCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGACA 183325 | | ||| | ||||| |||| || || |||| ||| | ||||| ||||| | || | Sbjct 4250698 TTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATA 4250640 Query 183326 TCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTG 183385 | || || || || ||||| ||| |||| || | | ||||||| ||| || || | | Sbjct 4250639 TTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTT 4250580 Query 183386 GTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCAG 183445 |||| || ||||| |||| || || || | ||||| || || || |||||||| Sbjct 4250579 GTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGA 4250520 Query 183446 CATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTTCC 183505 | || | ||||| ||| | || || ||||||||||| | || | || | |||||| Sbjct 4250519 CTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCT 4250460 Query 183506 TCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGC 183565 | |||| || |||||| ||||||||||||||||| | || ||||| ||||| | Sbjct 4250459 TACTTGGTGTAGCTTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATAC 4250400 Query 183566 GTCCTTGGATCTGTGTTGCTTAT 183588 | |||||||| |||||| ||| Sbjct 4250399 GCCCTTGGATTGTTGTTGCATAT 4250377 >seq13 Length=34719086 Score = 149 bits (164), Expect = 8e-31 Identities = 263/383 (69%), Gaps = 2/383 (1%) Strand=Plus/Plus Query 183207 GATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTGATGATTCCAAC 183266 ||| ||||||| | | || | || || | || |||||||| ||||||| | || Sbjct 21513217 GATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTAC 21513276 Query 183267 TCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGACA 183325 | | ||| | ||||| |||| || || |||| ||| | |||| ||||| | || | Sbjct 21513277 TTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATA 21513335 Query 183326 TCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTG 183385 | || || || || ||||| ||| |||| || | | ||||||| ||| || || | | Sbjct 21513336 TTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTT 21513395 Query 183386 GTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCAG 183445 |||| || ||||| |||| || || || | ||||| || || || |||||||| Sbjct 21513396 GTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGA 21513455 Query 183446 CATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTTCC 183505 | || | ||||| ||| | || || ||||||||||| | || | || | |||||| Sbjct 21513456 CTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCT 21513515 Query 183506 TCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGC 183565 | |||| || |||||| ||||||||||||||||| | || ||| ||||| | Sbjct 21513516 TACTTGGTGTAGCTTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATAC 21513575 Query 183566 GTCCTTGGATCTGTGTTGCTTAT 183588 | |||||||| |||||| ||| Sbjct 21513576 GCCCTTGGATTGTTGTTGCATAT 21513598 >seq1081 Length=585217 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/197 (69%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 186417 TGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAA 186476 |||||||| || | | ||| | || ||||| || ||| ||||| | | || |||| Sbjct 578911 TGGTTCTTTGCGCTCAATTTTCGTGTGGCAGCTATATTTTGATTCATCCTCTTTTTCCAG 578852 Query 186477 GGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGT 186536 || || || || || || ||||| ||| || |||||| | || | || | | || Sbjct 578851 GGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTGGAGTGTTGGGC 578792 Query 186537 GGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGC 186596 |||||| | | | || |||||||||||||||||| ||||| | | ||||||||| Sbjct 578791 ACTGCTCTRTTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTATTTGAAGATGGT 578732 Query 186597 GAACAAGCAAACACATT 186613 || ||||| ||||| Sbjct 578731 GATGGTGCAAATACATT 578715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622060672374120