Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq9 271 8e-68 seq672 257 2e-63 seq1241 161 1e-34 seq13 154 2e-32 seq11 120 3e-22 seq629 109 6e-19 seq8 109 6e-19 seq5 86.0 7e-12 seq1081 82.4 9e-11 >seq9 Length=33717675 Score = 271 bits (300), Expect = 8e-68 Identities = 446/639 (70%), Gaps = 4/639 (1%) Strand=Plus/Plus Query 165280 GTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGG 165339 |||||||||| || || | || ||||||||| | || || | ||||| | | || | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATG 26714246 Query 165340 CAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT-CTATGGGGTCCTGAG 165398 ||||||| ||||| || | | | | || | |||| | || |||||||||||||| Sbjct 26714247 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 165399 TCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTC 165458 | ||||| || || | || ||||| ||| | || | || | ||||||||| || || Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 165459 CACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATC 165518 || || || || | ||| |||||||| ||| | || || ||||| || || ||| | | Sbjct 26714366 CATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTT 26714424 Query 165519 GGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTT 165578 | | | |||| ||||| ||||| ||||| ||||| |||||||| || ||| ||| Sbjct 26714425 GAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTGTA 26714483 Query 165579 TTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCA 165638 || || || ||||| | || || || |||||||| ||||| || || || ||| Sbjct 26714484 TTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCA 26714543 Query 165639 GCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTT 165698 || || || ||||| | ||||| | || ||||| ||||| ||||| || || || ||| Sbjct 26714544 GCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTT 26714603 Query 165699 CACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTT 165758 || |||||||| || | || | || |||| || ||| | | || ||||| |||| | Sbjct 26714604 CATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGCT 26714663 Query 165759 ACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGAT 165818 | || | |||||||| | || ||||||||| ||||| || ||| | || | Sbjct 26714664 ATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAAC 26714723 Query 165819 AGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATT 165878 ||||| | || ||||||||||| |||||||| |||||| || ||||| || || Sbjct 26714724 CCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATC 26714783 Query 165879 TTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTC 165917 ||| | ||||||| |||||| |||||| | || ||| Sbjct 26714784 TTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 257 bits (284), Expect = 2e-63 Identities = 508/754 (67%), Gaps = 31/754 (4%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||| | ||| |||| ||||||||||| || |||||| | | | || ||| Sbjct 1649946 GATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGCCAATTACTCTTT 1649887 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || ||| ||| | ||| | ||||||||| | ||| | | | | |||| Sbjct 1649886 CCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT-----GGAAT-------TTA--ATTTGG 1649841 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTT 165344 ||||| || || | || ||||||||| | || || ||||| | | || |||||| Sbjct 1649840 TATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTAAGTGATGCAGTT 1649781 Query 165345 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT-CTATGGGGTCCTGAGTCTCA 165403 || ||||| || | | | | || | |||| | || |||||||||||||| | || Sbjct 1649780 TCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAAGCACA 1649722 Query 165404 AGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGG 165463 ||| || || | || ||||| ||| | || | || | ||||||||| || || || || Sbjct 1649721 AGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACATGG 1649662 Query 165464 AGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTAT 165523 || || | ||| |||||||| ||| | || || ||||| || || ||| | | | Sbjct 1649661 CGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTTSAATT 1649603 Query 165524 TCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCT 165583 | |||| ||||| ||||| ||||| ||||| |||||||| || ||| ||| || || Sbjct 1649602 GTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCT 1649543 Query 165584 TATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAAT 165643 || |||| | || || || |||||||| ||||| || || || ||||| || Sbjct 1649542 AATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTAT 1649483 Query 165644 CTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACAT 165703 || ||||| | ||||| | || ||||| ||||| ||||| || || || ||||| || Sbjct 1649482 ATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTCATAT 1649423 Query 165704 GATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGT 165763 |||||| || | || | || |||| || || | | || ||||| |||| || | Sbjct 1649422 GATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGTGCTATCAT 1649363 Query 165764 AGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTAC 165823 | | |||||||| | || |||||| ||| | | || || || || Sbjct 1649362 ARAAAATACTTTATTTGGAGATGGGGAA-----ATTCCGGTTTAACCCA---------AC 1649317 Query 165824 TCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGG 165883 ||| | || ||||||||||| |||||||| |||||| || ||||| || || ||| | Sbjct 1649316 TCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCTTTAG 1649257 Query 165884 TATTGCTTTCAGCAATAAGCGTTGGCTTCACTTC 165917 ||||||| |||||| |||||| | || ||| Sbjct 1649256 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 161 bits (178), Expect = 1e-34 Identities = 266/375 (71%), Gaps = 8/375 (2%) Strand=Plus/Minus Query 163952 GACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGG-CAGC 164010 || |||| | | || | || ||||| || || ||||||| || | | | | | | || Sbjct 4250745 GAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGC 4250687 Query 164011 GACTACATGT-TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCC 164069 ||| | ||| || || || || ||||| | ||| ||||| | || || ||||| || | Sbjct 4250686 AACTTC-TGTATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTC 4250628 Query 164070 GCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCC 164129 | ||||| || |||| || | | ||||||| ||| || || | | |||| |||| | Sbjct 4250627 GTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTC 4250568 Query 164130 CTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACG 164189 || ||||| ||||| ||| ||||||| ||||| || |||||||| | | | || | Sbjct 4250567 CTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATG 4250508 Query 164190 AATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCAT-- 164247 ||||| | ||||| |||||||||| | || |||| | |||||| | |||| | Sbjct 4250507 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 4250448 Query 164248 CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGAT 164307 || |||| || |||||||||||||||||||| || ||||| ||||| || |||||||| Sbjct 4250447 CT-TGCT-ACGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGAT 4250390 Query 164308 TTGCGTAGCATACTC 164322 | || ||||| || Sbjct 4250389 TGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 154 bits (170), Expect = 2e-32 Identities = 266/380 (70%), Gaps = 8/380 (2%) Strand=Plus/Plus Query 163952 GACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGG-CAGC 164010 || |||| | | || | || ||||| || || ||||||| || | | | | | | || Sbjct 21513230 GAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGC 21513288 Query 164011 GACTACATGT-TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCC 164069 ||| | ||| || || || || ||||| ||| ||||| | || || ||||| || | Sbjct 21513289 AACTTC-TGTATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTC 21513347 Query 164070 GCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCC 164129 | ||||| || |||| || | | ||||||| ||| || || | | |||| |||| | Sbjct 21513348 GTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTC 21513407 Query 164130 CTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACG 164189 || ||||| ||||| ||| ||||||| ||||| || |||||||| | | | || | Sbjct 21513408 CTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATG 21513467 Query 164190 AATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCAT-- 164247 ||||| | ||||| |||||||||| | || |||| | |||||| | |||| | Sbjct 21513468 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 21513527 Query 164248 CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGAT 164307 || |||| || |||||||||||||||||||| || ||| ||||| || |||||||| Sbjct 21513528 CT-TGCT-ACGTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGAT 21513585 Query 164308 TTGCGTAGCATACTCTGCTC 164327 | || ||||| || ||| Sbjct 21513586 TGTTGTTGCATATTCARCTC 21513605 >seq11 Length=35299535 Score = 120 bits (132), Expect = 3e-22 Identities = 207/301 (69%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 165869 GTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTT 165928 ||| || || ||||| ||||| | |||||| | |||| | || ||| ||||| | || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 165929 TGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCT 165988 ||| | || | || | |||| ||| || ||| | | ||||| || | || || Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTAGTGGGTCTGGCCTTGAACCT 68791 Query 165989 TCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAAC 166048 |||| ||||||||||| |||||| | || | | || ||||| || ||||| || Sbjct 68790 ACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAGAC 68731 Query 166049 GTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGA 166108 ||||| || || || || ||| | |||||||| | | ||| ||| ||| || ||| Sbjct 68730 TTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAAGA 68671 Query 166109 CCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTA 166168 || ||| |||| ||| || | |||||||| || || || || | || ||||| ||||| Sbjct 68670 TCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCTTTA 68611 Query 166169 A 166169 | Sbjct 68610 A 68610 >seq629 Length=2291386 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 164558 ACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTAC 164617 ||||| |||||||| | || || ||||||| |||||||| || |||||||||||| Sbjct 2030054 ACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTAC 2029995 Query 164618 AACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAAC 164677 || ||||| || ||||| ||||| ||||| | |||| |||||||| ||| || ||| Sbjct 2029994 AATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAAC 2029935 Query 164678 AACTCCCGTTCGCTGCACTTCTT 164700 ||||| | ||| | |||||||| Sbjct 2029934 AACTCTCATTCTTTACACTTCTT 2029912 >seq8 Length=29603939 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 164558 ACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTAC 164617 ||||| |||||||| | || || ||||||| |||||||| || |||||||||||| Sbjct 4091897 ACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTAC 4091956 Query 164618 AACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAAC 164677 || ||||| || ||||| ||||| ||||| | |||| |||||||| ||| || ||| Sbjct 4091957 AATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAAC 4092016 Query 164678 AACTCCCGTTCGCTGCACTTCTT 164700 ||||| | ||| | |||||||| Sbjct 4092017 AACTCTCATTCTTTACACTTCTT 4092039 >seq5 Length=31606955 Score = 86.0 bits (94), Expect = 7e-12 Identities = 125/175 (71%), Gaps = 8/175 (5%) Strand=Plus/Plus Query 165734 ATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACA 165793 || ||||| | | |||||||||| ||| ||||| |||||||| | |||||||||||| Sbjct 10237640 ATGGCTTTGTTCTATTCATGGTGCTACCGTAGA-AATACTTTATTTGAAGATGGTGATGG 10237698 Query 165794 AGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCAC 165853 ||||| || ||| || ||| | ||||| | || |||||||||| ||| Sbjct 10237699 TGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATT------TCAA 10237752 Query 165854 TGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGG 165908 || | ||||||| | ||| || || | ||| ||||||| ||||| |||||| Sbjct 10237753 TGGTCACCGTTT-TSGTCCCAAATCTATGGGGTTGCTTTTTCCAATAGACGTTGG 10237806 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 165734 ATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACA 165793 || ||||| | | |||||||||| ||| ||||| |||||||| | |||| ||||||| Sbjct 10264587 ATGGCTTTGTTCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAARATGGTGATGG 10264528 Query 165794 AGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCAC 165853 ||||| || ||| || ||| | ||||| | || ||||||||||| |||||||| Sbjct 10264527 TGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCAC 10264468 >seq1081 Length=585217 Score = 82.4 bits (90), Expect = 9e-11 Identities = 112/158 (71%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 165633 GTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAAT 165692 || ||||| || || ||||| | ||||| |||| ||||| ||||| || || |||| Sbjct 578887 GTGGCAGCTATATTTTGATTCATCCTCTTTTTCCAGGGGTTTCATAATTGAACATTGAAC 578828 Query 165693 CCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCAT 165752 ||||| |||||| | || | || | || ||| || | | | | |||||| Sbjct 578827 TYATTTCATATGATGAGAGTTGTTGGAGTGTTGGGCACTGCTCTRTTATGCACTATTCAT 578768 Query 165753 GGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGA 165790 |||||||| ||||| ||||||| | |||||||||||| Sbjct 578767 GGTGTTACTGTAGAAGATACTTTATTTGAAGATGGTGA 578730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557645679679320