Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq9 244 1e-59 seq672 206 3e-48 seq1241 178 2e-39 seq13 172 7e-38 seq11 134 2e-26 seq629 102 1e-16 seq8 102 1e-16 seq12 98.7 1e-15 >seq9 Length=33717675 Score = 244 bits (270), Expect = 1e-59 Identities = 439/637 (69%), Gaps = 4/637 (1%) Strand=Plus/Plus Query 178968 TGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCT 179027 |||||||| || | | || ||| ||| | || || | ||| ||| | | || ||| Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATGCA 26714248 Query 179028 GTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCT 179087 || || ||||| ||| | | | | || | | | | | ||||||||||| ||||| Sbjct 26714249 GTTTCCACTCCGGCTAATAGTTTAGCGCACTTCTTGTTGTTACTATGGGGTCCTGAAGCA 26714308 Query 179088 CAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCAC 179147 || |||||||| || ||| ||| | || | |||| | ||||||| || || || Sbjct 26714309 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACAT 26714368 Query 179148 GGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGG 179206 || || |||| || |||||||| ||| | || || ||||| | || || ||| || | Sbjct 26714369 GGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCT-GTTGA 26714426 Query 179207 TATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTT 179266 | | |||| |||||||| || || || |||||||||||||| ||||| ||||| || Sbjct 26714427 ATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGT-TTTGTTTCTGTATT 26714485 Query 179267 TCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGC 179326 || || ||||| | || ||||| ||||||||||| || ||||| || ||||| Sbjct 26714486 CCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGC 26714545 Query 179327 GATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCA 179386 || || | ||| | ||||| | ||||| || || || ||||| || ||||| || || Sbjct 26714546 TATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTCA 26714605 Query 179387 CATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTAC 179446 |||||||| || | || | |||||| || ||| | || || ||||| ||||||| Sbjct 26714606 TATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGCTAT 26714665 Query 179447 AGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCC 179506 || | || || | |||| ||| |||| ||||||||||| | ||| | || Sbjct 26714666 CATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAACCC 26714725 Query 179507 TACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTT 179566 || |||| || || || ||||| ||||| || | |||| || ||||| || ||||| Sbjct 26714726 AACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCTT 26714785 Query 179567 TGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTC 179603 | | | || || |||||| |||||| |||||||| Sbjct 26714786 TAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 206 bits (228), Expect = 3e-48 Identities = 427/637 (67%), Gaps = 17/637 (3%) Strand=Plus/Minus Query 178968 TGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCT 179027 |||||||| || | | || ||| ||| | || || | ||| ||| | | || ||| Sbjct 1649843 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTAAGTGATGCA 1649784 Query 179028 GTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCT 179087 || || ||||| ||| | | | | || | | | | | ||||||||||| ||||| Sbjct 1649783 GTTTCCACTCCGGCTAATAGTTTAGCGCACTTCTTGTTGTTACTATGGGGTCCTGAAGCA 1649724 Query 179088 CAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCAC 179147 || |||||||| || ||| ||| | || | |||| | ||||||| || || || Sbjct 1649723 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACAT 1649664 Query 179148 GGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGG 179206 || || |||| || |||||||| ||| | || || ||||| | || || ||| | Sbjct 1649663 GGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTTSAA 1649605 Query 179207 TATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTT 179266 | | | |||| |||||||| || || || |||||||||||||| ||||| ||||| || Sbjct 1649604 TTGT-GACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTATT 1649546 Query 179267 TCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGC 179326 || || |||| | || ||||| ||||||||||| || ||||| || ||||| Sbjct 1649545 CCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGC 1649486 Query 179327 GATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCA 179386 || || | ||| | ||||| | ||||| || || || ||||| || ||||| || || Sbjct 1649485 TATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATTTCA 1649426 Query 179387 CATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTAC 179446 |||||||| || | || | |||||| || || | || || ||||| ||||||| Sbjct 1649425 TATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGTGCTAT 1649366 Query 179447 AGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCC 179506 || | || || | |||| ||| | | | |||| | || | || Sbjct 1649365 CATARAAAATACTTTATTTGGAGATGGGG-----------AAATTCCGG---TTTAACCC 1649320 Query 179507 TACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTT 179566 || |||| || || || ||||| ||||| || | |||| || ||||| || ||||| Sbjct 1649319 AACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAATCTT 1649260 Query 179567 TGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTC 179603 | | | || || |||||| |||||| |||||||| Sbjct 1649259 TAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 178 bits (196), Expect = 2e-39 Identities = 282/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 || |||| || | ||||| || | |||| ||| || | || ||||| ||||| || Sbjct 4250769 TTTTGTAGCTAGATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTG 4250710 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||| ||| | | | || || ||||| || || | |||||| | ||||| || Sbjct 4250709 ATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACC 4250651 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| | || || || || || |||||||| || |||| || | | ||||| | ||| Sbjct 4250650 TCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAA 4250591 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || |||| | |||| || ||||| ||||| ||||| ||| | ||||| || || || Sbjct 4250590 TATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTAT 4250531 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| ||||| | ||||| ||| | |||||||||||||||| | || || | Sbjct 4250530 ATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 4250471 Query 177897 CTTCCACTTCCTGATCG--GTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTAC 177954 | |||||| | | | ||| || ||| ||| |||||||||||||||||||| || Sbjct 4250470 TCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGTGAGTGGGAACTTAGTTTT 4250413 Query 177955 CGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTC 177992 || || ||||| || || ||||| ||| ||||| || Sbjct 4250412 CGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 172 bits (190), Expect = 7e-38 Identities = 282/403 (70%), Gaps = 6/403 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 || |||| || | ||||| || | |||| ||| || | || ||||| ||||| || Sbjct 21513206 TTTTGTAGCTAGATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTG 21513265 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||| ||| | | | || || ||||| || || | |||||| | |||| || Sbjct 21513266 ATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTRCTGCACC 21513324 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| | || || || || || |||||||| || |||| || | | ||||| | ||| Sbjct 21513325 TCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAA 21513384 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || |||| | |||| || ||||| ||||| ||||| ||| | ||||| || || || Sbjct 21513385 TATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTAT 21513444 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| ||||| | ||||| ||| | |||||||||||||||| | || || | Sbjct 21513445 ATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 21513504 Query 177897 CTTCCACTTCCTGATCG--GTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTAC 177954 | |||||| | | | ||| || ||| ||| |||||||||||||||||||| || Sbjct 21513505 TCTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGTGAGTGGGAACTTAGTTTT 21513562 Query 177955 CGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTC 177997 || ||||| || || ||||| ||| ||||| || ||| Sbjct 21513563 YKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCARCTC 21513605 >seq11 Length=35299535 Score = 134 bits (148), Expect = 2e-26 Identities = 210/298 (70%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 179555 GTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTT 179614 ||| || |||||||| | || | |||||| | |||| |||||||| ||||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 179615 TGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGG-TCTTGCACTTAACC 179673 ||| | || | ||| | |||| | || | | | || ||| ||| || | |||| Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGT-GCTCTTGAAGTAGTGGGTCTGGCCTTGAACC 68792 Query 179674 TTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGA 179733 | | | ||||| |||||||| || | ||| | | ||| |||||||| || |||| Sbjct 68791 TACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAGA 68732 Query 179734 CGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCG 179793 | ||||| ||||| || || || || ||||||||| ||| ||||||||||| | | Sbjct 68731 CTTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAAG 68672 Query 179794 ATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 |||| || |||||||| || |||| ||||| || || || || | || |||||||| Sbjct 68671 ATCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCT 68614 >seq629 Length=2291386 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 178227 AACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTA 178286 |||||| || || ||| | || || ||||||| || |||||||| ||||| ||||| Sbjct 2030055 AACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTA 2029996 Query 178287 CAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAA 178346 ||| ||||| || ||||||||||| || || | ||||||||||||| || || || Sbjct 2029995 CAATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAA 2029936 Query 178347 CAACTCCCGTTCGCTGCACTTCTT 178370 |||||| | ||| | |||||||| Sbjct 2029935 CAACTCTCATTCTTTACACTTCTT 2029912 >seq8 Length=29603939 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 178227 AACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTA 178286 |||||| || || ||| | || || ||||||| || |||||||| ||||| ||||| Sbjct 4091896 AACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTA 4091955 Query 178287 CAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAA 178346 ||| ||||| || ||||||||||| || || | ||||||||||||| || || || Sbjct 4091956 CAATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAA 4092015 Query 178347 CAACTCCCGTTCGCTGCACTTCTT 178370 |||||| | ||| | |||||||| Sbjct 4092016 CAACTCTCATTCTTTACACTTCTT 4092039 >seq12 Length=31678690 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 179715 GAGGATCCTGAGTTC-GAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACG 179773 || |||||||| || ||||| ||||| ||||| || || || || | ||||||| | | Sbjct 15529645 GAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGGTATTCA 15529586 Query 179774 TGCTTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATT 179833 ||||||||||||| | |||||||| ||||||||| || |||| |||||||| || || Sbjct 15529585 TGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGAGGTTTT 15529526 Query 179834 GCCAAGAGGCAACGCTCT 179851 || | || ||| |||| Sbjct 15529525 ACCCCGTGG-AACTCTCT 15529509 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 179715 GAGGATCCTGAGTTC-GAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACG 179773 || |||||||| || ||||| ||||| ||||| || || || || | ||||||| | | Sbjct 15589916 GAAGATCCTGAATTTTGAGACTTTCTACACCAAAAATATTCTCTTAAGTGAAGGTATTCA 15589857 Query 179774 TGCTTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGA 179827 ||||||||||||| | |||||||| ||||||||| || |||| |||||||| Sbjct 15589856 TGCTTGGATGGCARCTTAAGATCAACCTCATGAAAACCTTATATTCCCTGAAGA 15589803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596297875246160