Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq9 264 1e-65 seq672 232 8e-56 seq1241 147 3e-30 seq13 141 1e-28 seq1081 102 1e-16 seq629 98.7 1e-15 seq8 98.7 1e-15 seq5 87.8 2e-12 seq15 86.0 7e-12 >seq9 Length=33717675 Score = 264 bits (292), Expect = 1e-65 Identities = 447/640 (70%), Gaps = 6/640 (1%) Strand=Plus/Plus Query 170722 GTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGG 170781 ||||||| ||||| || | |||||||| || | ||||| |||| ||| | | | | Sbjct 26714187 GTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATG 26714246 Query 170782 CTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAG 170840 | || || || || ||| || | | | || | |||| || | ||| ||||||||||| Sbjct 26714247 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 170841 TCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTC 170900 | || || ||||| || |||| ||| | || | || | || |||||| || || Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 170901 CACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGT 170959 || || || || | || |||||||| ||| | || || ||||| | ||| ||| || Sbjct 26714366 CATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCT-GT 26714423 Query 170960 AGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGT 171019 | | |||| | |||||||| || ||||| ||||| || ||||| ||||| || Sbjct 26714424 TGAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGT-TTTGTTTCTGT 26714482 Query 171020 GTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGC 171079 ||||| || ||||| | || ||||| ||||||||||| |||||| ||||| || || Sbjct 26714483 ATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGC 26714542 Query 171080 AGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATT 171139 ||| || || | ||| | ||||| | || || || || || |||||||| || ||||| Sbjct 26714543 AGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATT 26714602 Query 171140 TCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGT 171199 |||||||||||| |||| || | | |||| ||| ||| | | || ||||| |||| Sbjct 26714603 TCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGC 26714662 Query 171200 TACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGA 171259 || || | |||||||| | || |||||||||| ||||| || || | || | Sbjct 26714663 TATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAA 26714722 Query 171260 CACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGAT 171319 | | ||||| | ||||| || ||||| |||||||| |||| | || ||||| || || Sbjct 26714723 CCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAAT 26714782 Query 171320 TTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTC 171359 ||| | | || || |||||| |||||||| |||||| Sbjct 26714783 CTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 232 bits (256), Expect = 8e-56 Identities = 438/642 (68%), Gaps = 19/642 (3%) Strand=Plus/Minus Query 170720 AAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGC 170779 || |||||| ||||| || | |||||||| || | ||||| ||| ||| | | | Sbjct 1649847 AATTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTAAGTGA 1649788 Query 170780 GGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTG 170838 || || || || || ||| || | | | || | |||| || | ||| |||||||||| Sbjct 1649787 TGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTG 1649729 Query 170839 AGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGC 170898 | | || || ||||| || |||| ||| | || | || | || |||||| || | Sbjct 1649728 AAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCAC 1649669 Query 170899 TCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTC 170957 | || || || || | || |||||||| ||| | || || ||||| | ||| ||| Sbjct 1649668 TACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCT- 1649611 Query 170958 GTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGC 171017 || | |||| | |||||||| || ||||| ||||| || ||||| ||||| Sbjct 1649610 GTTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCT 1649551 Query 171018 GTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTT 171077 || ||||| || |||| | || ||||| |||||||||| |||||| ||||| || Sbjct 1649550 GTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGTGTA 1649491 Query 171078 GCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCA 171137 ||||| || || | ||| | ||||| | || || || || || |||||||| || ||| Sbjct 1649490 GCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCA 1649431 Query 171138 TTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGT 171197 |||||||||||||| |||| || | | |||| ||| || | | || ||||| ||| Sbjct 1649430 TTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCTATTCACGGT 1649371 Query 171198 GTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTT 171257 | || || | |||||||| | || |||||| || || || || ||| Sbjct 1649370 GCTATCATARAAAATACTTTATTTGGAGATGGGGA--AA----------TTCCGG--TTT 1649325 Query 171258 GACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAG 171317 || | ||||| | ||||| || ||||| |||||||| |||| | || ||||| || Sbjct 1649324 AACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAA 1649265 Query 171318 ATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTC 171359 || ||| | | || || |||||| |||||||| |||||| Sbjct 1649264 ATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 147 bits (162), Expect = 3e-30 Identities = 273/397 (69%), Gaps = 4/397 (1%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 || |||| || | ||||| || ||| || | ||| || | || ||||| || || || Sbjct 4250769 TTTTGTAGCTAGATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTG 4250710 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 ||||||| | || | ||||| || || || || || ||||| | ||| || Sbjct 4250709 ATGATCCTTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCT 4250650 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || | || || || || || || ||||| ||| |||| ||| | | ||||| | ||| Sbjct 4250649 CCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAAT 4250590 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || | | |||| || | || |||| || || ||| | ||||| || || || Sbjct 4250589 ATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATA 4250530 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| | | | ||||||||||| ||||| |||||||||| | || |||| Sbjct 4250529 TGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTT 4250470 Query 169652 TTCCACTTCCTCATCG--GCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATC 169709 | |||||| | | | | | || ||| ||| ||||||||||||||||| | | || Sbjct 4250469 CTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGTGAGTGGGAACTTAGTTTTC 4250412 Query 169710 GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTC 169746 |||||||||| ||||||||||| |||||| || || Sbjct 4250411 GTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTC 4250375 >seq13 Length=34719086 Score = 141 bits (156), Expect = 1e-28 Identities = 273/402 (68%), Gaps = 4/402 (1%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 || |||| || | ||||| || ||| || | ||| || | || ||||| || || || Sbjct 21513206 TTTTGTAGCTAGATAACCAGCATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTG 21513265 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 ||||||| | || | ||||| || || || || || ||||| ||| || Sbjct 21513266 ATGATCCTTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTRCTGCACCT 21513325 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || | || || || || || || ||||| ||| |||| ||| | | ||||| | ||| Sbjct 21513326 CCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAAT 21513385 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || | | |||| || | || |||| || || ||| | ||||| || || || Sbjct 21513386 ATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATA 21513445 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| | | | ||||||||||| ||||| |||||||||| | || |||| Sbjct 21513446 TGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTT 21513505 Query 169652 TTCCACTTCCTCATCG--GCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATC 169709 | |||||| | | | | | || ||| ||| ||||||||||||||||| | | | Sbjct 21513506 CTACACTTCTTACTTGGTGTAGCT-TGC-TACGTGGGTCGTGAGTGGGAACTTAGTTTTY 21513563 Query 169710 GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTC 169751 ||||||||| ||||||||||| |||||| || || ||| Sbjct 21513564 KTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCARCTC 21513605 >seq1081 Length=585217 Score = 102 bits (112), Expect = 1e-16 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 171043 AGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCT 171102 |||| ||||||||||| || | ||| | || ||||| || || | ||| | |||| Sbjct 578919 AGTCTAGTTGGTTCTTTGCGCTCAATTTTCGTGTGGCAGCTATATTTTGATTCATCCTCT 578860 Query 171103 TCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTA 171162 | | || || || || || || ||| |||| ||||||||||||| | |||| || Sbjct 578859 TTTTCCAGGGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTGGAG 578800 Query 171163 TCCTCGGCGGTGCATTGCTTTCTGCA--ATTCATGGTGTTACAGTAGAGAATACTTTGTA 171220 | | ||| ||| | || |||| |||||||||||||| ||||| ||||||| | Sbjct 578799 TGTTGGGCACTGCTCTR--TTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTATT 578742 Query 171221 TGAAGATGGTGATCAAGCAAACACCTT 171247 ||||||||||||| ||||| || || Sbjct 578741 TGAAGATGGTGATGGTGCAAATACATT 578715 >seq629 Length=2291386 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 170003 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGT 170062 || || ||||||| || |||||||| ||||| |||||||| ||||| || ||||| ||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 170063 TACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTC 170122 || || || | ||||||||||||| ||| || |||||||| | ||| | |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 170123 TT 170124 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 170003 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGT 170062 || || ||||||| || |||||||| ||||| |||||||| ||||| || ||||| ||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 170063 TACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTC 170122 || || || | ||||||||||||| ||| || |||||||| | ||| | |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 170123 TT 170124 || Sbjct 4092038 TT 4092039 >seq5 Length=31606955 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 10/182 (5%) Strand=Plus/Plus Query 171176 ATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCA 171235 || ||||| | | |||||||||| ||| ||||| |||||||| | ||||||||||||| Sbjct 10237640 ATGGCTTTGTTCTATTCATGGTGCTACCGTAGA-AATACTTTATTTGAAGATGGTGATGG 10237698 Query 171236 AGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATA-TTCTATGGTCA 171294 ||||| || || || ||| || | ||||| | ||||| || || ||| ||||||| Sbjct 10237699 TGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTTCAATGGTCA 10237758 Query 171295 CTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGC 171354 | ||||| | ||| || || | ||| | || || ||||| |||||||| | Sbjct 10237759 C-------CGTTT-TSGTCCCAAATCTATGGGGTTGCTTTTTCCAATAGACGTTGGTTAC 10237810 Query 171355 AT 171356 || Sbjct 10237811 AT 10237812 >seq15 Length=47181002 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 171130 TGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAA 171189 |||| |||||| |||||||||| ||||| | | | ||| | | || | | || | Sbjct 22821485 TGAACCCATTTTATATGATGGGAGTTGCTAGGGTGTTGGGCACTACTCTGTTATKCGCTA 22821544 Query 171190 TTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTA 171249 |||||||||||| |||| |||| ||| | ||||||||||||| ||||| || || Sbjct 22821545 TTCATGGTGTTATCATAGAAAATATTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 22821604 Query 171250 AGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGG 171291 || ||| || | ||||| | ||||| || ||||| |||| Sbjct 22821605 GTGCTTTTAACCCAACTCAATATGAAGAAACTTATTCAATGG 22821646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592189139497520