Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq17 113 5e-20 >seq17 Length=27373735 Score = 113 bits (124), Expect = 5e-20 Identities = 269/401 (67%), Gaps = 7/401 (2%) Strand=Plus/Plus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 || ||| ||||||||||| || || || || |||| ||| | ||||| |||||||| Sbjct 24447974 CAAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGT 24448033 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 || || ||||| ||| || ||||||| ||||||||| ||| ||| ||||| || Sbjct 24448034 TAATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAA 24448093 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||||| ||||| || | ||||| ||||| | | || ||| | ||| || Sbjct 24448094 AAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGTC---TCCGAACC 24448150 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | |||||| | | ||||||| || |||| | ||| | || || ||||| Sbjct 24448151 ATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGC 24448210 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | ||| || | || || | ||| | ||||| || || | | || ||||| Sbjct 24448211 ATGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTA 24448270 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT-AAAAGCATCGGGCTTCCG 17318 ||| || ||||| || ||||| || || || || ||||| | ||||||| || || || | Sbjct 24448271 CATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCA-CGAGCCTCAG 24448329 Query 17319 CTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTC 17358 ||| ||||||||| | || || || | || |||||||| Sbjct 24448330 CTACCTGAACTTCCTTCATA-AAACGGCCAGCGAGATTTTC 24448369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517532538442920