Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq17 136 4e-27 >seq17 Length=27373735 Score = 136 bits (150), Expect = 4e-27 Identities = 370/558 (66%), Gaps = 9/558 (2%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||||||||| ||||| || | ||||| |||| ||| | ||||| ||||| ||||| Sbjct 24447977 ACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTTAA 24448036 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC-GAAAAGA 16319 || ||||| ||| || ||||||| ||| ||||| || ||| | | || || || | Sbjct 24448037 TCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCAGAGAAAA 24448095 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 |||| ||||| ||| | ||||||||||| | | || ||| | || || | | Sbjct 24448096 ATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAA---AGTCTCCGAACCAT 24448152 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||||| | | |||| || || |||| | |||| | || || ||||| | Sbjct 24448153 CAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGCAT 24448212 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 |||||| | || || | || | ||||| || || | || | |||||||| Sbjct 24448213 GAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTACA 24448272 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT-AGAAGCATCGAGCCTCCGCT 16558 | || ||||| || ||||| || || || || ||||||| | ||||| |||||||| ||| Sbjct 24448273 TCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCA-CGAGCCTCAGCT 24448331 Query 16559 ATTTGTACTTCC-ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 | || |||||| | ||||| || | || || || ||| || ||||| ||| || Sbjct 24448332 ACCTGAACTTCCTTCATAAAA-CGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGC 24448390 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 |||||| || || | | || | || || | || || || || || || | | ||| Sbjct 24448391 AGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCA 24448450 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 || | ||||| || | ||| || || || | ||||||||| ||| | || || Sbjct 24448451 ATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTTT 24448510 Query 16738 TTTATACATTTTCCAAAT 16755 || ||||| | ||| || Sbjct 24448511 CTTGTACATCTCCCATAT 24448528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511401493179080