Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq17 98.7 9e-16 seq10 91.5 1e-13 seq16 82.4 7e-11 >seq17 Length=27373735 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA-ACCCGC 29020 ||||| || ||| | || || ||||| || ||||| |||||| || ||| | | || Sbjct 16112100 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACTATTACCCTGGAGGTGGAGAGCAGC 16112159 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||||| || || |||||| | || |||||| Sbjct 16112160 -GACACCATTGATAATGTTAAGGCAAAAATTCAGGACAAGGAAGGTATCCCACCAGATCA 16112218 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || ||||| || || || || ||||||||| | ||| |||| |||||||| Sbjct 16112219 GCAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTACAA 16112278 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||||||||||| ||| | ||| | ||| Sbjct 16112279 CATTCAGAAGGAATCCACTTTGCACCTAGTG 16112309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| ||||| ||||||||||| || ||||| ||||| Sbjct 16111965 GACAAGGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTTGCCGGAAAACAGCTGGAG 16112024 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | || | |||||||| || ||||||||||||||||| |||||| | ||| | Sbjct 16112025 GACGGCCGCACATTAGCCGATTATAACATTCAGAAGGAATCTACCCTTCACCTCGTGCTT 16112084 Query 29175 CGATTACGAGGAGGG 29189 || | || |||||| Sbjct 16112085 CGTCTGCGTGGAGGG 16112099 >seq10 Length=26335333 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28963 TGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA-ACCCGCA 29021 |||| || ||| | || || ||||| || ||||| |||||| ||| ||| | | || Sbjct 4732809 TGCAGATTTTCGTTAAGACCTTGACTGGAAAAACTATTACCTTGGAAGTGGAGAGCAGC- 4732867 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||||||| || ||||||||| | || | | || Sbjct 4732868 GACACCATTGATAATGTCAAGGCAAAAATTCAGGACAAAGAAGGTATTCCACCAAACCAG 4732927 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || |||||||| || || || ||| |||| | | ||| |||| ||| |||| Sbjct 4732928 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGAAAGACAGCCAGACTTTGGCTGATCACAAC 4732987 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 |||||||||||||| ||||| ||| Sbjct 4732988 ATTCAGAAGGAATCCACTCTCCAC 4733011 >seq16 Length=28979753 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || ||||| || ||||| |||||| || |||| | Sbjct 1160193 ATGCAGATCTTCGTTAAGACCTTGACTGGGAAAACTATTACCTTGGAGGTGGAAAGCAGC 1160134 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||||| ||||| || || | || ||| || Sbjct 1160133 GACACCATTGATAACGTCAAGGCAAAAATTCAGGATAAGGAGGGAATCCCACCAGACCAG 1160074 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || ||||| || || || |||||||||||| | ||| |||| |||||||| Sbjct 1160073 CAGAGGCTGATCTTCGCCGGAAAGCAACTGGAAGATGGCCGCACTTTGGCTGATTACAAC 1160014 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 ||||| |||||||| ||||| || Sbjct 1160013 ATTCAAAAGGAATCCACTCTCCA 1159991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428325460123445