Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 seq16 87.8 1e-12 seq17 86.0 5e-12 >seq2 Length=32417782 Score = 96.9 bits (106), Expect = 3e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||| ||||| || ||||| || ||||||||||||||| | ||| |||| ||| Sbjct 15025611 GATCAACAGAGACTGATTTTTGCTGGAAAACAATTGGAAGATGGTAGAACATTGGCTGAT 15025552 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||| || |||||||| || ||||||||| |||| || Sbjct 15025551 TACAACATCCAAAAGGAGTCGACTCTTCACCTGGTTTT 15025514 >seq16 Length=28979753 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || ||||| || ||||| |||||| || |||| | Sbjct 1160193 ATGCAGATCTTCGTTAAGACCTTGACTGGGAAAACTATTACCTTGGAGGTGGAAAGCAGC 1160134 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| ||||||| ||||| || || | || ||| || Sbjct 1160133 GACACCATTGATAACGTCAAGGCAAAAATTCAGGATAAGGAGGGAATCCCACCAGACCAG 1160074 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || ||||| || || || ||| |||||||| | ||| |||| |||||||| Sbjct 1160073 CAGAGGCTGATCTTCGCCGGAAAGCAACTGGAAGATGGCCGCACTTTGGCTGATTACAAC 1160014 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 |||||||||||||| ||||| || Sbjct 1160013 ATTCAAAAGGAATCCACTCTCCA 1159991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA-ACCCGC 25093 ||||| || ||| | ||||| ||||| ||||| || |||||| ||| ||| | | || Sbjct 1160421 ATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACTATTACCCTCGAGGTGGAGAGCAGC 1160362 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | ||||| || ||| || || ||||| | || ||| || Sbjct 1160361 -GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCA 1160303 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| |||||||| || || || || | ||||| ||| |||| ||||| || Sbjct 1160302 GCAAAGGCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACTTTGGCTGATTATAA 1160243 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| || ||||| |||||| | ||| | || | || ||||| Sbjct 1160242 TATTCAAAAAGAGTCTACCCTTCACCTTGTGCTCCGTCTGCGTGGAGG 1160195 >seq17 Length=27373735 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || ||||| | ||| |||||| ||||| ||||||||||| || ||||| |||| Sbjct 16111965 GACAAGGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTTGCCGGAAAACAGCTGGAG 16112024 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | || | |||||||| || ||||| ||||||||||| |||||| | ||| | Sbjct 16112025 GACGGCCGCACATTAGCCGATTATAACATTCAGAAGGAATCTACCCTTCACCTCGTGCTT 16112084 Query 25248 CGATTACGAGGAGGG 25262 || | || |||||| Sbjct 16112085 CGTCTGCGTGGAGGG 16112099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410786691702866