Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7 116 6e-21 seq10 113 7e-20 seq2 102 1e-16 seq16 100 4e-16 seq11 98.7 2e-15 seq17 96.9 5e-15 seq3 96.9 5e-15 seq5 86.0 9e-12 >seq7 Length=27069033 Score = 116 bits (128), Expect = 6e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | || || || ||||| ||| | ||| |||| | Sbjct 1828845 ATGCAGATATTTGTGAAGACCTTGACTGGGAAGACTATCACTCTGGAGGTTGAGAGTTCT 1828786 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | || ||||| ||||| || ||||| || ||||| ||||| Sbjct 1828785 GATACAATTGACAATGTGAAGGCAAAAATCCAAGACAAGGAAGGAATTCCACCGGATCAG 1828726 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||||||||| || |||||||| | | || | | |||||||| Sbjct 1828725 CAAAGGCTTATCTTTGCAGGAAAGCAGCTAGAGGATGGGAGGACCCTCGCGGATTATAAC 1828666 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || || || ||| | || | || | ||| | || ||||| Sbjct 1828665 ATCCAGAAGGAGTCCACTCTCCACCTTGTGCTCCGTCTTCGCGGTGG 1828619 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| |||| || || || || || || ||||| | || | ||| Sbjct 1829074 AATGCAGATCTTTGTAAAAACCCTCACCGGAAAGACGATAACCCTGGAAGTCGAAAGCTC 1829015 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| ||| | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 1829014 GGATACAATCGATAACGTCAAAGCCAAGATTCAAGATAAGGAAGGTATCCCACCAGATCA 1828955 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||| || || || | |||||| | | || | | |||||||| Sbjct 1828954 ACAACGATTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCCTCGCTGATTATAA 1828895 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||| || ||||| | ||| ||||| Sbjct 1828894 CATCCAAAAGGAGTCAACCCTTCATCTGGTT 1828864 >seq10 Length=26335333 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || || || || || ||| |||| | || ||| Sbjct 23442547 ATGCAGATTTTTGTGAAGACCTTGACCGGGAAGACAATCACTCTAGAAGTCGAGAGCTCG 23442488 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | ||| ||||| || || || ||||| ||||| |||||||| Sbjct 23442487 -GATACTATTGATAATGTCAAAGCAAAAATCCAGGACAAGGAAGGGATACCGCCTGATCA 23442429 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| |||||||| || || |||||||||||| | || ||| | | |||||||| Sbjct 23442428 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAGGATGGGCGTACACTTGCTGATTATAA 23442369 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || || || || || | || | || | ||| | || |||||| Sbjct 23442368 TATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTTCGCGGTGGT 23442320 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || || || || || ||||| ||| | ||| |||| ||| Sbjct 23443459 ATGCAGATCTTTGTTAAAACCCTCACCGGAAAGACTATTACTCTTGAGGTTGAGAGCTC- 23443401 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| |||| | || || || |||||||||||||| || || ||||| || Sbjct 23443400 TGACACTATTGATAATGTCAAGGCCAAGATCCAAGATAAAGAAGGGATCCCTCCTGACCA 23443341 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || || || ||||| ||| | |||||| |||| || | | || ||||| Sbjct 23443340 GCAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGGACCCTTGCTGACTATAA 23443281 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || || || || ||||| | ||| | || || | || ||||| Sbjct 23443280 TATTCAGAAGGAGTCGACACTGCATCTTGTTCTCCGGTTGAGGGGAGGTAT 23443230 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || ||||| ||||| ||| | ||| | || Sbjct 23447262 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACTATCACTCTTGAGGTGGAGAGTTCC 23447203 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || || || ||||| || ||||| || ||||||||||| Sbjct 23447202 GACACAATTGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGATCAG 23447143 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || || || |||||||| | || ||| | ||||| | | |||||||| Sbjct 23447142 CAGAGGCTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGAACCCTTGCCGATTATAAC 23447083 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || || || || || || | || ||||| Sbjct 23447082 ATCCAGAAGGAGTCGACACTCCACCTGGTT 23447053 >seq2 Length=32417782 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || || ||||| || || ||||||||||| || || |||||||| |||||||||| Sbjct 15025637 TTCAGGACAAGGAAGGCATTCCTCCTGATCAACAGAGACTGATTTTTGCTGGAAAACAAT 15025578 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| || ||||||| | ||||| || || ||||| || || ||| | || ||| Sbjct 15025577 TGGAAGATGGTAGAACATTGGCTGATTACAACATCCAAAAGGAGTCGACTCTTCACCTGG 15025518 Query 124747 TTTT 124750 |||| Sbjct 15025517 TTTT 15025514 >seq16 Length=28979753 Score = 100 bits (110), Expect = 4e-16 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| ||||| || ||| | ||||| || || || || || || ||| | ||| | ||| Sbjct 1160654 TACAGATGCAGATTTTTGTTAAGACCCTCACTGGAAAGACAATCACTCTCGAGGTCGAAA 1160595 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 | |||||| ||| ||| | ||| |||||||||||||| ||||| || ||||||| Sbjct 1160594 GCAGTGATACCATTGATAACGTCAAAGCCAAAATTCAAGATAAGGAAGGGATTCCACCTG 1160535 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 | || || | || || || || || || || | |||||| | || || || | |||| Sbjct 1160534 ACCAGCAGCGTCTCATCTTCGCCGGGAAGCAGCTTGAGGATGGCCGTACCTTGGCCGATT 1160475 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || || || || || || | ||| | || | ||| | || |||||||| Sbjct 1160474 ACAACATCCAGAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTCCGTGGTGGTAT 1160420 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| || || ||||| || || || || || ||||||||||| || || ||||| Sbjct 1160337 AAGATTCAGGACAAGGAAGGAATTCCTCCAGACCAGCAAAGGCTTATCTTCGCCGGAAAG 1160278 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || || |||| || || | |||||||||||||||||||| || || | || Sbjct 1160277 CAGCTCGAAGACGGTCGCACTTTGGCTGATTATAATATTCAAAAAGAGTCTACCCTTCAC 1160218 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | || | ||| | || || ||||| Sbjct 1160217 CTTGTGCTCCGTCTGCGTGGAGGTAT 1160192 >seq11 Length=27369018 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || || || ||||| || || ||| | ||| | ||| Sbjct 5722996 ATGCAGATCTTTGTAAAAACTCTCACCGGCAAGACAATCACTTTGGAGGTGGAAAGTTCA 5723055 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| || || || || ||||||||||| ||||| || || Sbjct 5723056 GACACCATTGACAATGTAAAGGCTAAGATCCAGGACAAAGAAGGTATTCCACCAGACCAG 5723115 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || |||||||| | || || | | || || ||| Sbjct 5723116 CAGAGGCTGATCTTTGCTGGTAAGCAGCTAGAGGATGGCCGCACCCTTGCTGACTACAAT 5723175 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| || || || | |||||||| Sbjct 5723176 ATTCAAAAGGAGTCCACCCTTCATTTGGT 5723204 >seq17 Length=27373735 Score = 96.9 bits (106), Expect = 5e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| || || ||||| || || || ||||| ||||||||||| ||||| |||||| Sbjct 16111956 AAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTTGCCGGAAAA 16112015 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 || | ||||| | || ||||||| |||||||| ||||| || ||||| || Sbjct 16112016 CAGCTGGAGGACGGCCGCACATTAGCCGATTATAACATTCAGAAGGAATCTAC 16112068 Score = 89.7 bits (98), Expect = 8e-13 Identities = 165/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 124533 AATACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA 124591 |||||| ||||| || || | ||||| || || || ||||| || ||| | ||| | || Sbjct 16111637 AATACAGATGCAGATCTTCGTTAAGACCCTCACCGGAAAAACCATCACTCTCGAGGTCGA 16111696 Query 124592 -AGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCAC 124650 |||| || || || || | ||| ||||| || |||||||||||||| |||| Sbjct 16111697 GAGCAGC-GACACCATCGACAACGTCAAAGCCAAAATCCAGGATAAAGAAGGTATCCCAC 16111755 Query 124651 CTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAG 124710 | || || || | || || ||||| ||||| ||| | ||||| | || || || | | Sbjct 16111756 CAGACCAGCAGCGTCTCATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCTTGGCTG 16111815 Query 124711 ATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| || || ||||| || || ||| | || | || | ||| | || ||||| || Sbjct 16111816 ATTACAACATCCAAAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGTGGTGGCAT 16111873 >seq3 Length=29412403 Score = 96.9 bits (106), Expect = 5e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| |||||| ||| || || | ||| | ||||||||||||||||| | |||| Sbjct 22425867 AAGATTCAGGATAAAAAAGAAATTCCCCTAGATTAGCAAAGGCTTATTTTTGCCGAAAAA 22425808 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 || |||||||| |||| ||||||| ||||| |||||| | || ||||| || Sbjct 22425807 CAGCTAGAGGATGGTCGTACATTAGCTGATTAGAATATTTAGAAGGAATCTAC 22425755 >seq5 Length=28438989 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||| || || || |||||| | ||| | ||| | Sbjct 727505 ATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACCATAACTCTCGAGGTAGAATCCTCG 727564 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || ||||| || || || || ||||| ||||| Sbjct 727565 GACACTATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCGGATCAG 727624 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || |||||||||||| | || ||| | || || | | ||| || || Sbjct 727625 CAGCGCCTCATCTTCGCAGGAAAACAACTGGAAGATGGACGGACCCTTGCAGACTACAAC 727684 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| || || |||||| | || ||||| | ||||| | ||||| Sbjct 727685 ATTCAGAAGGAGTCAACTCTCCACTTGGTGCTGCGTTTGAGGGGTGG 727731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755436934179200