Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq18 109 8e-19 seq2 95.1 2e-14 seq10 84.2 3e-11 seq7 84.2 3e-11 >seq18 Length=25231592 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || |||| ||| | ||| || || || || || ||||| Sbjct 8340448 GTTCCTCCCCTAAGCCTCAAAACCAGATGAAGAGTTGACTCCTTCTGGATGTTGTAATCA 8340507 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||| | ||| || |||||||| ||||||||||| ||||| |||||||| ||| Sbjct 8340508 GCAAGGGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAAATTAATCTCTGCTGATCAGGA 8340567 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 8340568 GGAATGCCTTCCTTGTCCTG 8340587 >seq2 Length=32417782 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || |||| || | ||| || || || || || ||||| Sbjct 15025496 GTTCCTCCCCTAAGCCTCAAAACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCA 15025555 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | ||||| | ||| || |||||||||||||||||||||| ||| || ||||| ||| Sbjct 15025556 GCCAATGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGTTGATCAGGA 15025615 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 15025616 GGAATGCCTTCCTTGTCCTG 15025635 >seq10 Length=26335333 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| | |||||| || || || |||||||| | | ||| | || ||| || | || Sbjct 23443484 ATGGAGAGTAGACTCCTTCTGGATGTTATAATCGGCCAAAGTGCGGCCATCTTCAAGCTG 23443543 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| || ||||| |||||||||||||||||||| ||||| ||||| || ||||| Sbjct 23443544 TTTACCGGCAAAGATCAATCTTTGCTGATCCGGTGGAATCCCTTCCTTGTCTTG 23443597 >seq7 Length=27069033 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| | |||||||||||| ||||| || || | | || || | ||| || Sbjct 1829321 ACCAGATGCAGAGTAGATTCTTTCTGAATATTGTAGTCAGCTAAGGTCCTTCCATCCTCC 1829380 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||| ||||| |||| || ||||| || |||||||| ||||| |||||||| Sbjct 1829381 AATTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTATCTTG 1829439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743507635252480