Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq17 140 3e-28 >seq17 Length=27373735 Score = 140 bits (154), Expect = 3e-28 Identities = 369/559 (66%), Gaps = 11/559 (2%) Strand=Plus/Plus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| || ||||| || ||||| ||||| || | | || ||||||||||||||||| | Sbjct 24447977 ACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTTAA 24448036 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 || ||||| ||||| || || || | ||||||||| ||| || ||||| || || Sbjct 24448037 TCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAAAA 24448096 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 ||| || || || |||||| || | || | |||| || | | | | || || Sbjct 24448097 TATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAG---TCTCCGAACCATC 24448153 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||||| | |||||| | || |||| ||||| | | | || || |||| Sbjct 24448154 AATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGCATG 24448213 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 ||| ||| ||| || || ||| ||| |||||||| || | | | ||| ||||| Sbjct 24448214 AAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTACAT 24448273 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGCTTCGGATA 16592 || || ||||||||||| || || || || || |||| ||||||| | ||| || | || Sbjct 24448274 CTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCA-CGAGCCTCAGCTA 24448332 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 || ||||| ||| | | || | ||||| |||||| ||||| || | Sbjct 24448333 CCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGCAG 24448392 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAA---AGTTTTAACC 16709 |||| || ||||| | || | ||||| | || || ||| ||| || || || Sbjct 24448393 CAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTC---ATCGGAAGTTAGGGTTTCCC 24448449 Query 16710 AGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 | | | ||||| || | ||||||||| || |||||||||| || || | || | Sbjct 24448450 AATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTT 24448509 Query 16770 TTTTATACATTTTCCATAT 16788 | || ||||| | |||||| Sbjct 24448510 TCTTGTACATCTCCCATAT 24448528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462500327353400