Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq17 143 3e-29 >seq17 Length=27373735 Score = 143 bits (158), Expect = 3e-29 Identities = 386/576 (67%), Gaps = 21/576 (4%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 |||||||| ||||| || || | ||| ||||||| | || | ||||||||||||||| Sbjct 24447975 AAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTT 24448034 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| | ||| || || |||| |||||||||||| ||| ||| || || Sbjct 24448035 AATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAA 24448094 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 ||||| ||||| || ||||| || || | | |||| | ||| | | | | Sbjct 24448095 AATATCCCCTCCACACAGGCAAAAGCGATCAGCC--TCTC--AGCGA-AAGTCTCCGAAC 24448149 Query 14381 GAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438 || ||||| | |||||| |||| ||||| | | || | || || || | Sbjct 24448150 CATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGG 24448209 Query 14439 CATTAAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTAT-CAATAAGTAAG- 14494 ||| ||| ||| | | |||||| || ||| ||| || || || | ||| || ||| Sbjct 24448210 CATGAAACAAACGATTCTTCTCATTGGAGTCTTTG--ATATAAGTCTCCAACAA--AAGA 24448265 Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 || ||||| |||||||| || || || ||||| || || || ||||||||| | ||| Sbjct 24448266 CTGTACATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCC 24448325 Query 14555 TCTG--ACCATTGTACCT-CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 || | ||| || || | || ||||| | | || | ||||||| |||||||||| Sbjct 24448326 TCAGCTACC--TGAACTTCCTTCATAAAA-CGGCCAGCGAGATTTTCAAGAACTATACCA 24448382 Query 14612 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGT 14671 ||| || ||||| || || | | | | ||||||| | ||| || | || Sbjct 24448383 TCAGAGGCAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGG 24448442 Query 14672 TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCA 14731 ||| ||||| | | ||| | ||| ||||| || || || | |||||||| || Sbjct 24448443 GTTTCCCAATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCC 24448502 Query 14732 ACAGCTTTTTTATACATTACCCATATTTCTTTATAT 14767 | ||||| || ||||| ||||||||| | |||| Sbjct 24448503 TCGGCTTTCTTGTACATCTCCCATATTTGTGGATAT 24448538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482333426802920