Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2 109 4e-19 seq18 82.4 6e-11 seq17 82.4 6e-11 >seq2 Length=32417782 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | |||| |||||| || || || ||||| |||||||| || || Sbjct 15025498 TCCTCCCCTAAGCCTCAAAACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCAGC 15025557 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || |||| ||| ||||||||||||||| || ||| | || ||||| |||||||| || Sbjct 15025558 CAATGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGTTGATCAGGAGG 15025617 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 15025618 AATGCCTTCCTTGTC 15025632 >seq18 Length=25231592 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | |||| ||||| ||||| || || || |||||||| || || Sbjct 8340450 TCCTCCCCTAAGCCTCAAAACCAGATGAAGAGTTGACTCCTTCTGGATGTTGTAATCAGC 8340509 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||||||||||||||| || ||| | || | ||| || ||||| || Sbjct 8340510 AAGGGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAAATTAATCTCTGCTGATCAGGAGG 8340569 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 8340570 AATGCCTTCCTTGTC 8340584 >seq17 Length=27373735 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||||||| || || || || | ||| | || ||||| || ||||||||||| || || Sbjct 16112327 TCCTCCCCGAAGCCTGAGCACTAGGTGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGC 16112268 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||| || || || || |||| || || || ||||| || Sbjct 16112267 CAAAGTCCGGCCATCTTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCTGGTGG 16112208 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||||| | ||| || | ||| ||||| | | ||| Sbjct 16112207 GATACCTTCCTTGTCCTGAATTTTTGCCTTAACATTATCAATGGTGTCGCTGCTCTCCAC 16112148 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| || |||| || ||||| || || || ||||| ||||| Sbjct 16112147 CTCCAGGGTAATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 16112100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379334665648155