Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq17 161 9e-35 seq13 113 4e-20 seq10 113 4e-20 seq1 104 2e-17 seq7 96.9 3e-15 seq2 91.5 1e-13 seq16 89.7 5e-13 seq18 82.4 7e-11 >seq17 Length=27373735 Score = 161 bits (178), Expect = 9e-35 Identities = 391/583 (67%), Gaps = 13/583 (2%) Strand=Plus/Minus Query 57546 ATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTT 57605 ||||| || ||| |||||||| | || ||| | |||||||| || || || ||||| ||| Sbjct 24448552 ATGTTCCCAATTCAATATCCACAAATATGGGAGATGTACAAGAAAGCCGAGGCATCCTTT 24448493 Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAA 57665 ||||| | ||| || || || || ||| | ||||| || ||||||| |||| | Sbjct 24448492 TGGACTGCCGAGGAGGTCGATCTCTCTCAAGATCTCCGCCATTGGGAAACCCTAACT--- 24448436 Query 57666 TCTGA-GAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATT 57722 || || ||||| | ||||| | || || | || || || || || || |||||||| Sbjct 24448435 TCCGATGAGAAGCACTTTATCACCCATGTTCTTGCCTTCTTTGCTGCCTCTGATGGTATA 24448376 Query 57723 GTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGC 57782 ||| || ||| | | | | ||| | ||||| || || | ||||| | ||| Sbjct 24448375 GTTCTTGAAAATCTCGCTGGCCGTTTTATGAAGGAAGTTCAGGTAGCTGAGGCTCG-TGC 24448317 Query 57783 TTTT-ACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 |||| | ||||| ||| | || ||||| || | || || || ||||| || | | Sbjct 24448316 TTTTTATGGATTCCAAATCGCTATTGAGAATATTCACTCTGAGATGTACAGTCTTTTGTT 24448257 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 || || || | || ||| | | ||||| | | |||| | || ||||| || | Sbjct 24448256 GGAGACTTATATCAAAGACTCCAATGAGAAGAATCGTTTGTTTCATGCCATCGATACCGT 24448197 Query 57902 GCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC 57961 || | || || ||||| |||||| | ||| ||||| | | | || || Sbjct 24448196 TCCTTGTGTGGCTAAAAAGGCTGAGTGGGCTCTCAGGTGGATTGATGGTTC---GGAGAC 24448140 Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 ||||| |||||||| ||||| || ||| || || || ||||| || || || ||||| Sbjct 24448139 TTTCGCTGAGAGGCTGATCGCTTTTGCCTGTGTGGAGGGGATATTTTTCTCTGGAAGCTT 24448080 Query 58022 -TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACG 58080 |||| ||||||||||| | ||||| || || || ||||| || | || ||| |||| Sbjct 24448079 CTGCG-CAATATTTTGGCTAAAGAAGCGGGGACTCATGCCTGGATTAACATTTTCAAACG 24448021 Query 58081 AGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 ||||||| || || || || || | || ||||| ||||| Sbjct 24448020 AGTTGATCTCTCGAGATGAAGGCTTGCACTGCGATTTCGCGTG 24447978 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| || ||||| || ||| | || || || | Sbjct 16112100 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACTATTACCCTGGAGGTGGAGAGCAGC 16112159 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| |||||||||||| | || || || ||| Sbjct 16112160 GACACCATTGATAATGTTAAGGCAAAAATTCAGGACAAGGAAGGTATCCCACCAGATCAG 16112219 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| ||||||| |||| || ||||| ||| Sbjct 16112220 CAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTACAAC 16112279 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| ||| | || || || || || || |||| || Sbjct 16112280 ATTCAGAAGGAATCCACTTTGCACCTAGTGCTCAGGCTTCGGGGAGG 16112326 >seq13 Length=28119335 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| || || || || || || ||||| ||| | || ||||| Sbjct 2662203 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGT 2662262 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| | |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 2662263 CTTCGGACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCG 2662322 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | |||||||| || || ||||| || || ||| |||| ||| ||| | |||| Sbjct 2662323 ATCAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACTCTCGCTGATT 2662382 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || || || |||||||||||||| ||| | || | ||||| Sbjct 2662383 ACAACATCCAGAAGGAGTCCACTCTTCATCTGGTGCTTCGTCTCCGAGGCGG 2662434 >seq10 Length=26335333 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || ||||| ||||| || || ||| | || |||||| ||| Sbjct 23443003 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAGACCATAACCCTAGAGGTTGAAAGCTCC 23442944 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | || ||||||||||||| | || || |||||| Sbjct 23442943 GACACAATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 23442884 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || || || ||| |||| || | ||| | ||||| ||| Sbjct 23442883 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGGAGGACCCTCGCTGATTACAAC 23442824 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| || | ||||| || || || |||||||||| Sbjct 23442823 ATACAGAAGGAATCCACCTTGCATCTCGTTCTCCGATTGAGGGGCGG 23442777 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| ||||| ||| | || || ||| ||| Sbjct 23443231 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACGATAACCTTGGAGGTGGAAAGTTCC 23443172 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | || ||||||||||||| | || || |||||| Sbjct 23443171 GACACCATCGATAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 23443112 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || || | || || || | ||| ||||| Sbjct 23443111 CAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGATGGCCGAACCCTTGCCGACTATAAT 23443052 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| ||||| ||||| || || | ||||||| |||| Sbjct 23443051 ATACAGAAGGAATCCACTCTGCATCTTGTTCTGCGTTTGAGGGGAGGTA 23443003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || ||||| || ||||| || || || | || |||||| ||| Sbjct 23442775 ATGCAGATCTTTGTCAAAACTCTCACCGGCAAGACCATAACACTAGAGGTTGAAAGCTCC 23442716 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || || |||||||| | || || |||||| Sbjct 23442715 GACACAATTGATAACGTGAAGGCCAAGATCCAAGATAAGGAAGGAATCCCACCTGACCAG 23442656 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| | || ||| | ||| | |||||||||| Sbjct 23442655 CAGCGACTGATCTTCGCCGGGAAGCAGCTAGAGGACGGAAGGACCCTTGCCGATTATAAC 23442596 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || ||||| ||||| || | || |||| Sbjct 23442595 ATCCAGAAGGAGTCCACACTCCACCTGGTTCTTAGGCTTCGTGGGGGTA 23442547 >seq1 Length=34959721 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || || || || || || || | || || || Sbjct 31554515 CAAAGATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACCATAACTCTAGAGGTAGAGT 31554456 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| | |||| | || || | || |||||||| ||| | || || | Sbjct 31554455 CTTCGGACACTATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCACCGG 31554396 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || |||||||| ||||| | |||||| ||| | ||| | Sbjct 31554395 ACCAGCAGCGCCTCATCTTCGCTGGAAAACAACTAGAAGACGGCCGGACCCTTGCCGACT 31554336 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | |||||||| || || ||||||||||||||||| | | |||||||||| Sbjct 31554335 ACAACATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCGCTTGAGGGGCGG 31554284 >seq7 Length=27069033 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || || || ||| | || ||||| || Sbjct 1829301 ATGCAGATCTTCGTCAAGACTCTGACTGGTAAGACTATAACCCTAGAGGTTGAGAGCTCT 1829242 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| |||| | | | ||| | ||||||||||||| | || || ||||| Sbjct 1829241 GATACCATCGACAACGTTAAGGCCAAGATTCA-GGACAAGGAAGGCATCCCTCCTGACCA 1829183 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 |||| | | || || || || || ||| ||||||| | ||| | ||| ||||||| Sbjct 1829182 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGTCGGACGCT-AGCAGATTATA 1829124 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || | ||||| || || || ||||||| || Sbjct 1829123 ACATACAGAAGGAATCCACCTTGCATCTCGTTCTCCGATTGAGGGGAGG 1829075 >seq2 Length=32417782 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | || || || || ||| | || || || ||||| ||||| ||||| Sbjct 15025633 GGACAAGGAAGGCATTCCTCCTGATCAACAGAGACTGATTTTTGCTGGAAAACAATTGGA 15025574 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| ||||| ||||| || ||||||||||| ||||| | Sbjct 15025573 AGATGGTAGAACATTGGCTGATTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTTTT 15025514 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 15025513 GAGGCTTAGGGGAGG 15025499 >seq16 Length=28979753 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || |||| ||||| || || ||| |||| || || | Sbjct 1160421 ATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACTATTACCCTCGAGGTGGAGAGCAGC 1160362 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || |||||||||||| | || || |||||| Sbjct 1160361 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCAG 1160302 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || || ||| | |||||| | ||| || |||||||| Sbjct 1160301 CAAAGGCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACTTTGGCTGATTATAAT 1160242 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| || || ||||| || || || | ||| | || |||| Sbjct 1160241 ATTCAAAAAGAGTCTACCCTTCACCTTGTGCTCCGTCTGCGTGGAGGTA 1160193 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || ||||| || ||| | || || ||| | Sbjct 1160193 ATGCAGATCTTCGTTAAGACCTTGACTGGGAAAACTATTACCTTGGAGGTGGAAAGCAGC 1160134 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| ||| ||||| || | || || |||||| Sbjct 1160133 GACACCATTGATAACGTCAAGGCAAAAATTCAGGATAAGGAGGGAATCCCACCAGACCAG 1160074 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || || ||||||| ||| || ||||| ||| Sbjct 1160073 CAGAGGCTGATCTTCGCCGGAAAGCAACTGGAAGATGGCCGCACTTTGGCTGATTACAAC 1160014 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| ||||| ||||| ||||| || || || || Sbjct 1160013 ATTCAAAAGGAATCCACTCTCCATCTTGTGCTGAGGCT 1159976 >seq18 Length=25231592 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | || || || |||||| | |||| || ||||| ||||| ||||| Sbjct 8340585 GGACAAGGAAGGCATTCCTCCTGATCAGCAGAGATTAATTTTTGCTGGGAAACAATTGGA 8340526 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | || | ||||| ||||| || || || || |||||||||||||| | Sbjct 8340525 AGATGGAAGAACCCTTGCTGATTACAACATCCAGAAGGAGTCAACTCTTCATCTGGTTTT 8340466 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 8340465 GAGGCTTAGGGGAGG 8340451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755149970480