Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq17 257 2e-63 seq12 93.3 5e-14 >seq17 Length=27373735 Score = 257 bits (284), Expect = 2e-63 Identities = 424/610 (70%), Gaps = 4/610 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 |||||| |||||||||||||||| || || |||| | || || ||||| ||||| || Sbjct 24447974 CAAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGT 24448033 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | ||| ||||| || || ||||| || ||||||||||| | ||| ||| || || Sbjct 24448034 TAATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAA 24448093 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCA 33755 || || || || || ||||| || || || ||||| | || | | | | || Sbjct 24448094 AAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAA--GTCTCCGAACCA 24448151 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | |||||| | ||||||| || ||||| || |||||||| | || || |||||| Sbjct 24448152 TCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGCA 24448211 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 | ||| | | || || ||||| ||||| | |||||| || | ||||||||| ||| Sbjct 24448212 TGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTAC 24448271 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || ||||| || ||||| || || || ||||| || ||| | |||||| | Sbjct 24448272 ATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGCT 24448331 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | ||| ||||| | ||| || | || | ||||||| ||||| |||||| ||| Sbjct 24448332 ACCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGCA 24448391 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 34055 ||||| || || | ||||| | ||||| | || || || | ||||| | | |||| Sbjct 24448392 GCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCAA 24448451 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 | || ||||| ||| | ||| || || || | |||||||| |||||||| || || Sbjct 24448452 TGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTTTC 24448511 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || ||||| | ||| || | ||||||| |||||||| ||| || | || ||| ||| Sbjct 24448512 TTGTACATCTCCCATATTTGTGGATATTGAATTGGGAACATACAGAAACGATCTGGGTTT 24448571 Query 34176 GGTGCAAGGA 34185 || || |||| Sbjct 24448572 GGGGCGAGGA 24448581 >seq12 Length=31596830 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | ||| |||||||| || || ||||| | ||| | | || | Sbjct 29957735 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCAACGCTGAGACATCAAATGG 29957794 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||| |||| || ||||| | ||| |||||||| || || || | ||| | Sbjct 29957795 TAGGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGCTACCCTCATCAG 29957853 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| || || |||| ||| | | ||| || | ||||| |||||| Sbjct 29957854 CATGTGCTGAGGCCTCTCTACAACTTTCCCTTGCACTTTTAAGAGATAGGACCTTTCCAG 29957913 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || || || ||||| || | || |||||| || || ||||| || Sbjct 29957914 GGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCACGATCATAAATTAT 29957961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629801704978320