Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq17 136 4e-27 >seq17 Length=27373735 Score = 136 bits (150), Expect = 4e-27 Identities = 382/581 (66%), Gaps = 4/581 (1%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 |||||||| ||||| || || || ||||| |||| | || | || || ||||||||| Sbjct 24447975 AAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTT 24448034 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAA 11745 ||||| ||||| | ||| || || |||| ||||||||| || ||| || ||||| || Sbjct 24448035 AATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCAGAGAA 24448093 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA 11805 ||||| ||||||||| ||||| || | | || || | | || | | Sbjct 24448094 AAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGTCTCCGAACCATC 24448153 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||| | ||||| ||||| || || || || | || || || || | Sbjct 24448154 AATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGCATG 24448213 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 ||| ||| | | || || | ||| | | ||| || || | || | ||| ||||| Sbjct 24448214 AAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTACAT 24448273 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 || || |||||||| || ||||| ||||| |||||||| ||| || ||||| | Sbjct 24448274 CTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGCTAC 24448333 Query 11986 CTGTACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| || ||| ||||||| | | || | ||| ||| || ||||||||| | | Sbjct 24448334 CTGAACTTCCTTCATAAAA-CGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGCAG 24448392 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAAT 12104 |||| || || || | ||| | ||||||| || || || ||||| | ||||||| Sbjct 24448393 CAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCAAT 24448452 Query 12105 CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTT 12164 | ||||| || | ||| || || || | |||||||| |||| | | || | Sbjct 24448453 GGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTTTCT 24448512 Query 12165 TATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 | ||||| | ||| || | |||| | ||| ||||| ||| Sbjct 24448513 TGTACATCTCCCATATTTGTGGATATTGAATTGGGAACATA 24448553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468512975605360