Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq17 237 2e-57 seq2 87.8 2e-12 seq12 86.0 8e-12 >seq17 Length=27373735 Score = 237 bits (262), Expect = 2e-57 Identities = 405/583 (69%), Gaps = 6/583 (1%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 |||||| |||||||||||||| | || || |||| | || || ||||| ||||| || Sbjct 24447974 CAAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGT 24448033 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 36272 | ||| ||||| || || ||||| || ||||||||||| | |||| | | | ||||| | Sbjct 24448034 TAATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCCAGAGA 24448092 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--C 36330 | || || || || || ||||| || || || ||||| | || | | | | | Sbjct 24448093 AAAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAA--GTCTCCGAACC 24448150 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 || |||||| | ||||||| || ||||| || |||||||| | || || || || Sbjct 24448151 ATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGC 24448210 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 || ||| | | || || ||||| ||||| | ||| || || | ||||||||| || Sbjct 24448211 ATGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTA 24448270 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 ||| || || ||||| || ||||| || ||||| ||||| || ||| | |||||| | Sbjct 24448271 CATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGC 24448330 Query 36511 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 36570 | ||| ||||| | ||| || | || | ||||||| ||||| || ||| ||| Sbjct 24448331 TACCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGC 24448390 Query 36571 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCA 36630 ||||| || || | ||||| | ||||| | || || | | ||||| | | ||| Sbjct 24448391 AGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCA 24448450 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 || || ||||| ||| | ||| || || || | |||||||| |||||||| || || Sbjct 24448451 ATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTTT 24448510 Query 36691 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 || ||||| | ||| || | ||||||||||||| || ||| Sbjct 24448511 CTTGTACATCTCCCATATTTGTGGATATTGAATTGGGAACATA 24448553 >seq2 Length=32417782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 65959 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 66018 |||| || | || ||||| ||| || || || |||||| || |||| |||||| Sbjct 14721122 TTTCATAAATGGTGTACAAATTTTCAAATTCTTCCCCCCAACAATCAGCCAAACCAGGAA 14721063 Query 66019 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 66078 |||| || || | ||| ||||| || ||| | |||| || ||||||||||| Sbjct 14721062 CCTCATTGGGGCAAAACAAAGACCAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGAT 14721003 Query 66079 CAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTC 66124 |||||||||| ||||| ||| ||||||||||| | || |||||| || Sbjct 14721002 CAGGAATCCAGAGAGC-ATAGAATAAATCTCTAGCTCGATGTTCTTC 14720957 >seq12 Length=31596830 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | || || | ||| | || | ||||| |||||||| || Sbjct 29957321 TCCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGTAACATGGGAATAATGCC 29957380 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| || || ||||| || || || ||||| ||| | ||||||||||| || || Sbjct 29957381 ATTAGACGTCCCATTTGTTCCACGAATGTAGCTACCAGTAGCACGAATATTGTGAACAGA 29957440 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || ||| ||| | || || || | |||||||| || Sbjct 29957441 GACACCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATAT 29957500 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||| || ||||||||||| ||||| Sbjct 29957501 GCCTTCAATACTATCATCTTTCATG 29957525 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | ||| |||||||| || || ||||| | ||| | | || | Sbjct 29957735 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCAACGCTGAGACATCAAATGG 29957794 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | ||| |||| || ||||| | ||| |||||||| || || || | ||| | Sbjct 29957795 TAGGTTTTGATAACTGAATCAATATCATCCTTG-TGAATTCCAACAGCTACCCTCATCAG 29957853 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| || || || | || | | ||| || | ||||| |||||| Sbjct 29957854 CATGTGCTGAGGCCTCTCTACAACTTTCCCTTGCACTTTTAAGAGATAGGACCTTTCCAG 29957913 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 || || || ||||| || | || |||||| || || ||||| || Sbjct 29957914 GGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCACGATCATAAATTAT 29957961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156189363960