Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq16 131 2e-25 seq17 116 4e-21 seq10 111 2e-19 seq13 96.9 3e-15 seq7 86.0 6e-12 seq11 84.2 2e-11 >seq16 Length=28979753 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| ||||||||||||||||| |||||||| | Sbjct 1160195 CCTCCACGCAGACGGAGCACAAGGTGAAGGGTAGACTCTTTTTGAATATTATAATCAGCC 1160254 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||| || || || |||| || | |||||| || ||||| Sbjct 1160255 AAAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGGTCTGGAGGA 1160314 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | |||||| || |||||| Sbjct 1160315 ATTCCTTCCTTGTC-CTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCCAC 1160373 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | |||||||||||||| ||||| ||||| || |||||| Sbjct 1160374 CTCGAGGGTAATAGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCATA 1160422 >seq17 Length=27373735 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| ||||| || || ||||||||||||||| Sbjct 16112098 CCTCCACGCAGACGAAGCACGAGGTGAAGGGTAGATTCCTTCTGAATGTTATAATCGGCT 16112039 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||| || |||||||| || ||| |||| || | ||||||||| || || Sbjct 16112038 AATGTGCGGCCGTCCTCCAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGATCTGGGGGA 16111979 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | |||||| || ||| || Sbjct 16111978 ATTCCTTCCTTGTC-CTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCGAC 16111920 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| |||||||| ||||| || || || ||||| Sbjct 16111919 CTCAAGGGTAATAGTCTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 16111872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||||| || |||||||| || ||||||||||| Sbjct 16112554 CCACCACGCAGACGCAGGACAAGGTGAAGGGTCGACTCTTTCTGGATGTTATAATCAGCA 16112495 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || ||||| || |||||| |||| || | |||||||| || || Sbjct 16112494 AGAGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGA 16112435 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || | || | | || | ||||||| || |||||| Sbjct 16112434 ATACCCTCCTTATC-CTGAATCTTCGCCTTCACATTATCGATTGTGTCGCTGCTCTCCAC 16112376 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || ||||| || || || || || ||||| Sbjct 16112375 CTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 16112328 >seq10 Length=26335333 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | || | |||||||| || || |||||||||||| Sbjct 23443460 GCCGCCACGGAGACGGAGGACAAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCGGC 23443519 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||||||||| ||| |||||| | ||||||||| || || Sbjct 23443520 CAAAGTGCGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGTGG 23443579 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || ||| | | || | || |||| | ||| || Sbjct 23443580 AATCCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTATCGGAGCTCTCGAC 23443639 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||||||||| | ||||| ||||| || |||||| Sbjct 23443640 CTCGAGAGTAATGGTCTTGCCGGTGAGGGTTTTAACGAAAATCTGCATA 23443688 Score = 105 bits (116), Expect = 7e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||| ||||| | || ||| || || ||||| || || Sbjct 23442807 GTGGATTCCTTCTGTATGTTGTAATCAGCGAGGGTCCTCCCATCCTCCAGCTGCTTTCCG 23442866 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||||||| ||||| || ||||| |||||||| ||||| ||| || ||| Sbjct 23442867 GCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTA 23442926 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| | || ||||| | ||| | ||||||||||||| ||| Sbjct 23442927 ACATTGTCGATTGTGTCGGAGCTTTCAACCTCTAGGGTTATGGTCTTGCCGGTCAGGGTT 23442986 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 23442987 TTGACGAAGATCTGCATACCT 23443007 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| ||||| ||||| ||||||||||||| | || ||||| || || || || Sbjct 4732783 GTGAAGGGTAGATTCTTTCTGAATGTTATAATTGGCCAATGTGCAGTTATCCTCCAGTTG 4732724 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| ||||| ||||||| |||||||| |||| || |||| ||||| ||| | | Sbjct 4732723 TTTTTCAGCAAAGATCAGCTTTTGCTGATTTTGAGGAATTCCTTTCTTGTC-TTGAATCT 4732665 Query 139681 TTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | ||| | || || | |||||| || ||| || | || ||| | ||||| ||| Sbjct 4732664 TAGCCTTAACGGTATCATTGGTGTCGTTGCTCTCGACTTTAAGGGTAATAGTCTTTTCGG 4732605 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 |||| ||||| || || || ||||| Sbjct 4732604 TCAAGGTTTTCACAAAAATCTGCAT 4732580 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 || ||| | ||| | || ||||| || || |||||||||||| | || | || Sbjct 23447050 CAGAACCAGGTGGAGTGTCGACTCCTTCTGGATGTTATAATCGGCAAGGGTTCGGCCATC 23447109 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| || || ||||||| | |||||||| || || |||||||| ||||| Sbjct 23447110 TTCAAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCAGGTGGGATGCCTTCCTTGTC 23447169 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | || | |||||||| ||||||||||| || | || Sbjct 23447170 TTGGATCTTGGCCTTGACGTTATCAATTGTGTCGGAACTCTCCACCTCAAGAGTGATAGT 23447229 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||| | ||||| || || || ||||| Sbjct 23447230 CTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 23447262 >seq13 Length=28119335 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||||||||| | ||| | || | |||| || ||||| || || ||||| ||||| Sbjct 2662435 GCCGCCTCGGAGACGAAGCACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGC 2662376 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| || ||||| || || || ||||||| || |||||||||||||| Sbjct 2662375 GAGAGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAGG 2662316 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| | | ||| || Sbjct 2662315 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAAGACTCAAC 2662256 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||| || || | ||||| ||||| || ||||| Sbjct 2662255 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2662208 >seq7 Length=27069033 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| || || | ||| | || | ||| | || ||||| || || ||||||||||| Sbjct 1828615 ATCGCCACCGCGAAGACGGAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAATC 1828674 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | || ||| || || ||||| || || ||| |||| || | ||||||||| || Sbjct 1828675 CGCGAGGGTCCTCCCATCCTCTAGCTGCTTTCCTGCAAAGATAAGCCTTTGCTGATCCGG 1828734 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || ||||| ||||| ||||||| || | | || | ||| || | ||| Sbjct 1828735 TGGAATTCCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCAATTGTATCAGAACTCTC 1828794 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || | ||||| || ||||| || || || ||||| |||||| Sbjct 1828795 AACCTCCAGAGTGATAGTCTTCCCAGTCAAGGTCTTCACAAATATCTGCATA 1828846 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| ||||| ||||||||||| | || || || || ||||| Sbjct 1828871 TGAAGGGTTGACTCCTTTTGGATGTTATAATCAGCGAGGGTCCTTCCATCCTCCAGCTGC 1828930 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||||| ||||| ||||| || || || ||||| || || ||| | || Sbjct 1828931 TTCCCAGCAAAGATCAATCGTTGTTGATCTGGTGGGATACCTTCCTTATC-TTGAATCTT 1828989 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||| | | || | ||| || | | || || || | ||| | |||||| ||||| Sbjct 1828990 GGCTTTGACGTTATCGATTGTATCCGAGCTTTCGACTTCCAGGGTTATCGTCTTTCCGGT 1829049 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | |||||||| || || ||||| Sbjct 1829050 GAGGGTTTTTACAAAGATCTGCAT 1829073 >seq11 Length=27369018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| || ||||| |||||||| || || || | |||| || || Sbjct 5723204 ACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGCAAGGGTGCGGCCATCCTCT 5723145 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| ||||||||| ||||||| | ||||| || || || || ||||||||||| | Sbjct 5723144 AGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGG 5723085 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || |||| | || | ||||| | |||||||| | || | |||||| Sbjct 5723084 ATCTTAGCCTTTACATTGTCAATGGTGTCTGAACTTTCCACCTCCAAAGTGATTGTCTTG 5723025 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | |||||||| || || ||||| Sbjct 5723024 CCGGTGAGAGTTTTTACAAAGATCTGCAT 5722996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496051480584800