Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq17 138 1e-27 >seq17 Length=27373735 Score = 138 bits (152), Expect = 1e-27 Identities = 387/577 (67%), Gaps = 23/577 (4%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 |||||||| ||||| || || | ||| ||||||| | || | ||||||||||||||| Sbjct 24447975 AAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTT 24448034 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAA 13987 ||||| ||||| | ||| || || |||| |||||||||||| ||| || || || || Sbjct 24448035 AATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCAGAGAA 24448093 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||||| ||||| || ||||| || || | | |||| | ||| | | | Sbjct 24448094 AAATATCCCCTCCACACAGGCAAAAGCGATCAGCC--TCTC--AGCGA-AAGTCTCCGAA 24448148 Query 14048 CGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 | || ||||| | |||||| |||| ||||| | | || | || || || Sbjct 24448149 CCATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATG 24448208 Query 14106 GCATTAAATAAATATTCCTTCTCTTT--AGTACTTGAAATGTATGTAT-CAATAAGTAAG 14162 |||| ||| ||| | |||||| || ||| ||| || || || | ||| || ||| Sbjct 24448209 GCATGAAACAAACGATTCTTCTCATTGGAGTCTTTG--ATATAAGTCTCCAACAA--AAG 24448264 Query 14163 -CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT-AAAAGCATCTAG 14220 || ||||| |||||||| || || || ||||| || || || |||| ||||||| | || Sbjct 24448265 ACTGTACATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCA-CGAG 24448323 Query 14221 CTTC--CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278 | || | ||| || |||||| ||| | | || | ||||||| ||||||||| Sbjct 24448324 CCTCAGCTACC--TGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACC 24448381 Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG 14338 |||| || ||||| || || | | | | ||||||| | ||| || | || Sbjct 24448382 ATCAGAGGCAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAG 24448441 Query 14339 TTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398 ||| ||||| | | ||| | ||| ||||| || || || | |||||||| || Sbjct 24448442 GGTTTCCCAATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGC 24448501 Query 14399 GACAGCTTTTTTATACATTACCCATATTTCTTTATAT 14435 | ||||| || ||||| ||||||||| | |||| Sbjct 24448502 CTCGGCTTTCTTGTACATCTCCCATATTTGTGGATAT 24448538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479715892864600