Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq17 134 1e-26 >seq17 Length=27373735 Score = 134 bits (148), Expect = 1e-26 Identities = 382/575 (66%), Gaps = 19/575 (3%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 |||||||| ||||| || || | ||| ||||||| | || | ||||||||||||||| Sbjct 24447975 AAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTT 24448034 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| ||||| | ||| || || |||| |||||||||||| ||| ||| || || Sbjct 24448035 AATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAA 24448094 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 ||||| ||||| || ||||| || || || | |||| | ||| | | | Sbjct 24448095 AATATCCCCTCCACACAGGCAAAAGCGATCAGCC--TCTC--AGCGA-AAGTCTCCGAAC 24448149 Query 13837 GAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 || ||||| | |||||| |||| ||||| | | || | || ||||| | Sbjct 24448150 CATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGG 24448209 Query 13895 CATTGAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTAT-CAATAAGTAAG- 13950 ||| || ||| | | |||||| || ||| ||| || || || | ||| || ||| Sbjct 24448210 CATGAAACAAACGATTCTTCTCATTGGAGTCTTTG--ATATAAGTCTCCAACAA--AAGA 24448265 Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 || ||||| |||||||| || || || ||||| || || || ||||||||| | ||| Sbjct 24448266 CTGTACATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCC 24448325 Query 14011 TCTG--ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCAT 14068 || | ||| || || ||| ||| | | || | |||||| ||| ||||||| Sbjct 24448326 TCAGCTACC--TGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCAT 24448383 Query 14069 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14128 || || ||||| || || | | | | ||||||| | ||| || | || Sbjct 24448384 CAGAGGCAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGG 24448443 Query 14129 TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14188 ||| ||||| | | ||| | ||| ||||| || || || | |||||||| || Sbjct 24448444 TTTCCCAATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCT 24448503 Query 14189 CAGCTTTTTTATACATTACCCATATTTCTTTATAT 14223 | ||||| || ||||| ||||||||| | |||| Sbjct 24448504 CGGCTTTCTTGTACATCTCCCATATTTGTGGATAT 24448538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478576721615160