Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq17 96.9 3e-15 seq10 86.0 5e-12 >seq17 Length=27373735 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||| ||||||||| | |||||||| | ||| ||||| |||| || | ||| Sbjct 16111846 TGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCAAGTTGC 16111787 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 || |||||||| || | ||||| || || | || | ||||||||| || ||| Sbjct 16111786 TTTCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGGATACCTTCTTTATCCTGGATTTTG 16111727 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 ||||||| || | | ||||||| |||||| || | || || ||||||||||| Sbjct 16111726 GCTTTGACGTTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTTTTTCCGGTG 16111667 Query 43087 AGAGTTTTCACAAAAATTTGCAT 43109 || || || || || || ||||| Sbjct 16111666 AGGGTCTTAACGAAGATCTGCAT 16111644 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | ||| | || | || ||||| || | || ||||||| Sbjct 16112098 CCTCCACGCAGACGAAGCACGAGGTGAAGGGTAGATTCCTTCTGAATGTTATAATCGGCT 16112039 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || |||| |||| ||||| |||||||| || | | || ||||| | || Sbjct 16112038 AATGTGCGGCCGTCCTCCAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGATCTGGGGGA 16111979 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| || | ||||| || ||| ||||||| |||||| Sbjct 16111978 ATTCCTTCCTTGTC-CTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCGAC 16111920 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| | ||||||||||| || ||||| Sbjct 16111919 CTCAAGGGTAATAGTCTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 16111872 >seq10 Length=26335333 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||| |||||| || | ||| ||||| | | |||||| | || || ||||| Sbjct 23442345 TGGAGGGTGGACTCCTTCTGGATATTATAATCAGCAAGTGTACGCCCATCCTCTAATTGC 23442404 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 || || |||||||||| | ||| ||||| | ||| | ||||| || || ||| Sbjct 23442405 TTCCCAGCAAAAATCAGCCTCTGCTGATCAGGCGGTATCCCTTCCTTGTCCTGGATTTTT 23442464 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 ||||||| | ||| || || | ||| |||||| |||| || || || || ||||| Sbjct 23442465 GCTTTGACATTATCAATAGTATC-CGAGCTCTCGACTTCTAGAGTGATTGTCTTCCCGGT 23442523 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 | || ||||||||||| ||||| Sbjct 23442524 CAAGGTCTTCACAAAAATCTGCAT 23442547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381360215805102