Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq17 255 8e-63 seq12 86.0 8e-12 >seq17 Length=27373735 Score = 255 bits (282), Expect = 8e-63 Identities = 426/611 (70%), Gaps = 6/611 (1%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 |||||| |||||||||||||||| || ||||||| | || || ||||| ||||| || Sbjct 24447974 CAAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGT 24448033 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAA 42179 | ||| ||||| || || ||||| || ||||||||||| | |||| | | | ||||| | Sbjct 24448034 TAATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCCAGAGA 24448092 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--C 42237 | || || || || || ||||| || || || ||||| | || | | | | | Sbjct 24448093 AAAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAA--GTCTCCGAACC 24448150 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||| | ||||||| || ||||| || |||||||| | || || ||||| Sbjct 24448151 ATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGC 24448210 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 || ||| | | || || ||||| ||||| | ||| || || | ||||||||| || Sbjct 24448211 ATGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTA 24448270 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || ||||| || ||||| || || || ||||| || ||| | ||||| | Sbjct 24448271 CATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGC 24448330 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| ||||| | ||| || |||| | |||||| ||||| || ||| ||| Sbjct 24448331 TACCTGAACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGC 24448390 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCA 42537 ||||| || || | ||||| | ||||| | || || || | |||| | | ||| Sbjct 24448391 AGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCA 24448450 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || || ||||| ||| | ||| || || || | |||||||| ||||| || || || Sbjct 24448451 ATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTTT 24448510 Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 || ||||| | ||| || | |||||||||||||||| ||| || | || ||| || Sbjct 24448511 CTTGTACATCTCCCATATTTGTGGATATTGAATTGGGAACATACAGAAACGATCTGGGTT 24448570 Query 42658 TGGTGCAAGGA 42668 ||| || |||| Sbjct 24448571 TGGGGCGAGGA 24448581 >seq12 Length=31596830 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | || || | ||| | || | ||||| |||||||| || Sbjct 29957321 TCCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGTAACATGGGAATAATGCC 29957380 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| || | ||||| || || || ||||| ||| | |||||||||||| || || Sbjct 29957381 ATTAGACGTCCCATTTGTTCCACGAATGTAGCTACCAGTAGCACGAATATTGTGAACAGA 29957440 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| ||| | || || || | |||||||| || Sbjct 29957441 GACACCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATAT 29957500 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||| || ||||||||||| ||||| Sbjct 29957501 GCCTTCAATACTATCATCTTTCATG 29957525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122262124440