Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 1e-15 seq16 91.5 1e-13 seq2 82.4 8e-11 >seq10 Length=26335333 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 || || | ||| | ||| | || ||||| || |||||||||||||| | || ||| Sbjct 23442786 AATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATGTTGTAATCAGCGAGGGTCCTC 23442845 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 || || || || || || ||| |||||||||| ||||| || ||||| |||||||| Sbjct 23442846 CCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCC 23442905 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| || || ||| | | || | ||||| | | ||| || || | || Sbjct 23442906 TTGTCCTGGATCTTGGCTTTAACATTGTCGATTGTGTCGGAGCTTTCAACCTCTAGGGTT 23442965 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 | ||||||||||||| ||||| ||||| || |||||| || Sbjct 23442966 ATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATACCT 23443007 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || | ||| | ||||| || || || ||||| |||||| Sbjct 23443460 GCCGCCACGGAGACGGAGGACAAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCGGC 23443519 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| || |||||||| ||| |||||| | ||||||||| || || Sbjct 23443520 CAAAGTGCGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGTGG 23443579 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || ||| | | || | || || | | || || Sbjct 23443580 AATCCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTATCGGAGCTCTCGAC 23443639 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||||||||| | ||||| ||||| || |||||| Sbjct 23443640 CTCGAGAGTAATGGTCTTGCCGGTGAGGGTTTTAACGAAAATCTGCATA 23443688 >seq16 Length=28979753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | |||| ||||| |||||||| || || ||||| | Sbjct 1160195 CCTCCACGCAGACGGAGCACAAGGTGAAGGGTAGACTCTTTTTGAATATTATAATCAGCC 1160254 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||||||| || || || || |||| || | |||||| || ||||| Sbjct 1160255 AAAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGGTCTGGAGGA 1160314 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| || || || Sbjct 1160315 ATTCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCCACC 1160374 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||||||||| ||||| ||||| || |||||| Sbjct 1160375 TCGAGGGTAATAGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCATA 1160422 >seq2 Length=32417782 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| | |||| || || || ||||| ||||||||||| || ||| || || Sbjct 15025513 CAAAACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCAGCCAATGTTCTACCATC 15025572 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | |||||| |||||| | ||||| | || ||||| ||||| |||||||| ||||| Sbjct 15025573 TTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGTTGATCAGGAGGAATGCCTTCCTTGTC 15025632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507001604224080