Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq17 138 2e-27 >seq17 Length=27373735 Score = 138 bits (152), Expect = 2e-27 Identities = 376/560 (67%), Gaps = 18/560 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| || || |||| ||||||||||| | ||| ||||||||||| Sbjct 24448528 ATATGGGAGATGTACAAGAAAGCCGAGGCATCCTTTTGGACTGCCGAGGAGGTCGATCTC 24448469 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || | || || | ||||||| || | | ||| |||| | ||||| | Sbjct 24448468 TCTCAAGATCTCCGCCATTGGGAAACCC---TAACTTCCGATGAGAAGCACTTTATCACC 24448412 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 || || | ||||||||||| | ||| ||||| || || || ||||| | || | || Sbjct 24448411 CATGTTCTTGCCTTCTTTGCTGCCTCTGATGGTATAGTTCTTGAAAATCTCGCTGGC-CG 24448353 Query 125198 ATTCTCTCAAG--AGTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCAT 125254 || | | ||| |||| | | | |||| |||||| ||||| |||||||||||| Sbjct 24448352 -TTTTATGAAGGAAGTTCA-GGTAGCTGAGG-CTCGTGCTTTTTATGGATTCCAAATCGC 24448296 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 |||||||| | ||||| || |||||| | || | || | || || || | Sbjct 24448295 TATTGAGAATATTCACTCTGAGATGTACAGTCTTTTGTTGGAGACTTATATCAAAGA-CT 24448237 Query 125315 GCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 ||| | || | | | ||| | || ||||| || || || | | | |||||||| Sbjct 24448236 CCAATGAGAAGAATCGTTTGTTTCATGCCATCGATACCGTTCCTTGTGTGGCTAAAAAGG 24448177 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 || | |||| | ||||||| |||| || || | ||| || || ||| | | Sbjct 24448176 CTGAGTGGGCTCTCAGGTGGATTGATGGTTCGGAGACT---TTCGCTGAGAGGCTGATCG 24448120 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTC 125492 | || ||| || ||||| || || || || || || || ||| || || |||||||| Sbjct 24448119 CTTTTGCCTGTGTGGAGGGGATATTTTTCTCTGGAAGCTTCTGC-GCAATATTTTGGCTA 24448061 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| ||||||||||| ||| | || |||||||| || |||||||| || Sbjct 24448060 AAGAAGCGGGGACTCATGCCTGGATTAACATTTTCAAACGAGTTGATCTCTCGAGATGAA 24448001 Query 125553 GGCCTACACTGTGACTTTGC 125572 ||| | ||||| || || || Sbjct 24448000 GGCTTGCACTGCGATTTCGC 24447981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741040497518440