Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq15 98.7 7e-16 seq11 98.7 7e-16 seq10 96.9 3e-15 seq4 96.9 3e-15 seq16 91.5 1e-13 seq9 86.0 5e-12 seq7 82.4 6e-11 >seq15 Length=26192760 Score = 98.7 bits (108), Expect = 7e-16 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGC 15207 |||| || | ||| | ||| || ||||| || || |||||||| || || ||| | Sbjct 17285878 CTTAGCACGAGATGGATGGTTGATTCTTTCTGGATATTGTAATCAGCCAAGG-TTCGGCC 17285820 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | | || |||||| | ||||| | || ||||| ||| |||||||| || Sbjct 17285819 ATCTTCAAGCTACTTTCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGGATTCCTTCCTT 17285760 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| || ||| ||| ||| | || ||||||||||| | || || || | ||||| Sbjct 17285759 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTGCTCTCAACCTCGAGAGTAAT 17285700 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 ||| || || ||||| |||| || || || |||||||||| Sbjct 17285699 GGTCTTTCCGGTCAGGATTTTCACGAATATCTGCATATTTG 17285659 >seq11 Length=27369018 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||||||||| || ||||| || ||||| || || | | | || ||| Sbjct 5723204 ACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGCAAGGGTGCGGCCATCCTCT 5723145 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | |||| | || ||||| |||||| ||||||||||| Sbjct 5723144 AGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGG 5723085 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||||||| | || ||||| || | |||| || || || || || || || Sbjct 5723084 ATCTTAGCCTTTACATTGTCAATGGTGTCTGAACTTTCCACCTCCAAAGTGATTGTCTTG 5723025 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| || ||||| Sbjct 5723024 CCGGTGAGAGTTTTTACAAAGATCTGCAT 5722996 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 15166 GGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCC 15225 ||| || || || || || |||||||| || | ||| | || || | ||||| || Sbjct 5724105 GGTAGACTCCTTCTGGATATTGTAATCAGCAAGTGTCCTCCCATCCTCGAGCTGTTTTCC 5724046 Query 15226 AGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTT 15285 ||| ||||||| | || || || ||| || ||||| ||||| ||||| ||| Sbjct 5724045 AGCAAATATCAATCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCCTGGATTTTAGCCTT 5723986 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 ||| | || || ||||| | | ||||| || ||||||||||| || || || || || Sbjct 5723985 CACATTGTCAATAGTATCTGAACTCTCTACCTCCAAGGTAATGGTCTTCCCGGTAAGGGT 5723926 Query 15346 TTTTACAAAAATTTGCAT 15363 || ||||| || ||||| Sbjct 5723925 CTTCACAAAGATCTGCAT 5723908 >seq10 Length=26335333 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||||| | ||| | ||| | |||||| || || |||||||||||||| Sbjct 23442777 CCGCCCCTCAATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATGTTGTAATCAGCG 23442836 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| | || || | || || || || | |||| ||| || ||||| ||| Sbjct 23442837 AGGGTCCTCCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGA 23442896 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| || ||| | || || || ||| |||| || Sbjct 23442897 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCGATTGTGTCGGAGCTTTCAACC 23442956 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||| ||||| || || ||||| ||||| || || || |||||| Sbjct 23442957 TCTAGGGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATA 23443004 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC-GTCTTCTAATTG 15219 || || ||||| || || || ||||||| ||| | || ||| || ||||| | || Sbjct 4733010 TGGAGAGTGGATTCCTTCTGAATGTTGTGATCAGCCA-AAGTCTGGCTGTCTTTCAGCTG 4732952 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || || | |||| | || |||| |||||| ||||||||||| |||||| Sbjct 4732951 CTTCCCGGCAAAGATCAGCCTCTGCTGGTTTGGTGGAATACCTTCTTTGTCCTGAATTTT 4732892 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || ||||| ||||| | || || || |||||||| ||||| || || Sbjct 4732891 TGCCTTGACATTATCAATGGTGTCGCTGCTCTCCACTTCCAAGGTAATAGTTTTTCCAGT 4732832 Query 15340 CAGAGTTTTTACAAAAATTTGCA 15362 || || || || ||||| |||| Sbjct 4732831 CAAGGTCTTAACGAAAATCTGCA 4732809 >seq4 Length=28735499 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || |||||||| || ||| | | | || || | || Sbjct 24493225 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGC 24493284 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| | || ||||| ||||| ||||||||||| ||||||| Sbjct 24493285 TTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATCCCTTCTTTGTCCTGAATTTTG 24493344 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || | |||| || || ||||| || || || ||||| Sbjct 24493345 GCCTTGACATTGTCAATGGTGTCCGAACTTTCAACCTCCAAGGTGATTGTCTTCCCTGTA 24493404 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 24493405 AGGGTCTTAACAAATATCTGCAT 24493427 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| || ||| | | | || || | || Sbjct 24493681 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGC 24493740 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| | || ||||| ||||| ||||||||||| ||| ||| Sbjct 24493741 TTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATCCCTTCTTTGTCCTGAATCTTG 24493800 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || | |||| || || ||||| || || || ||||| Sbjct 24493801 GCCTTGACATTGTCAATGGTGTCCGAACTTTCAACCTCCAAGGTGATTGTCTTCCCTGTA 24493860 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 24493861 AGGGTCTTAACAAATATCTGCAT 24493883 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 15166 GGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCC 15225 ||| || || || || || |||||||| || | || | || || | || || || Sbjct 24493002 GGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTTCCATCCTCAAGCTGCTTTCC 24493061 Query 15226 AGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTT 15285 |||| | ||||| | || || || |||||||||||| ||||| ||||| ||| Sbjct 24493062 AGCGAAAATCAATCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCCTT 24493121 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 || | || || ||||| | | ||||| || || |||||||| || || || ||||| Sbjct 24493122 CACGTTGTCAATAGTATCCGAACTCTCTACCTCCAAAGTAATGGTCTTCCCAGTAAGAGT 24493181 Query 15346 TTTTACAAAAATTTGCAT 15363 || |||||||| ||||| Sbjct 24493182 CTTCACAAAAATCTGCAT 24493199 >seq16 Length=28979753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || ||||| ||||||||||| | | | | | ||||| | ||| Sbjct 1159990 ATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGCCATCTTCCAGTTG 1160049 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | |||| | || ||||| ||| ||||| || || || |||||| Sbjct 1160050 CTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGAATTTT 1160109 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || | || ||||| ||||| |||| || || |||||||| ||||| || || Sbjct 1160110 TGCCTTGACGTTATCAATGGTGTCGCTGCTTTCCACCTCCAAGGTAATAGTTTTCCCAGT 1160169 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || |||||| Sbjct 1160170 CAAGGTCTTAACGAAGATCTGCATA 1160194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || |||||||| || || ||||| | | | | ||||||| | || Sbjct 1160219 TGAAGGGTAGACTCTTTTTGAATATTATAATCAGCCAAAGTGCGACCGTCTTCGAGCTGC 1160278 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | | ||| ||||| ||||||||||| ||||| ||| || Sbjct 1160279 TTTCCGGCGAAGATAAGCCTTTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGAATCTTA 1160338 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| ||||| | || || || | |||||| || || || ||| Sbjct 1160339 GCCTTGACGTTGTCAATGGTGTCGCTGCTCTCCACCTCGAGGGTAATAGTCTTGCCGGTC 1160398 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || || || |||||| Sbjct 1160399 AAGGTTTTCACGAAGATCTGCATA 1160422 >seq9 Length=29413690 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||| ||||| ||||| ||||||| ||| ||| | || ||||||||||| | ||||| Sbjct 7061264 AATACCTTCCTTGTCCTGAATTTTGGCCTTGACATTATCGATGGTATCGCTGCTCTCTAC 7061205 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || | || ||||| || || ||||| ||||| |||||||| ||||| ||| Sbjct 7061204 CTCGAGAGTTATGGTCTTCCCAGTCAGGGTTTTGACAAAAATCTGCATCTTT 7061153 >seq7 Length=27069033 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||||||||| || || ||||| ||||| ||||| || | || | || || Sbjct 1828864 AACCAGATGAAGGGTTGACTCCTTTTGGATGTTATAATCAGCGAGGGTCCTTCCATCCTC 1828923 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || ||||| | ||||| |||||||| || ||| || ||||| || || Sbjct 1828924 CAGCTGCTTCCCAGCAAAGATCAATCGTTGTTGATCTGGTGGGATACCTTCCTTATCTTG 1828983 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| || || | || || ||||| |||| || || | ||| || || || Sbjct 1828984 AATCTTGGCTTTGACGTTATCGATTGTATCCGAGCTTTCGACTTCCAGGGTTATCGTCTT 1829043 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| || ||||| Sbjct 1829044 TCCGGTGAGGGTTTTTACAAAGATCTGCAT 1829073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362170288014879