Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq11 93.3 4e-14 seq17 89.7 4e-13 seq2 87.8 1e-12 seq4 86.0 5e-12 >seq11 Length=27369018 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| ||||||||||| || ||||||||||| || | ||| | | ||||| ||||| Sbjct 5724111 GTGCAAGGTAGACTCCTTCTGGATATTGTAATCAGCAAGTGTCCTCCCATCCTCGAGCTG 5724052 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||| || ||| | || | |||||||||||| || | ||| || ||||| ||||| Sbjct 5724051 TTTTCCAGCAAATATCAATCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCCTGGATTTT 5723992 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | |||||| | ||| || | ||||||||| || || || Sbjct 5723991 AGCCTTCACATTGTCAATAGTATCTGAACTCTCTACCTCCAAGGTAATGGTCTTCCCGGT 5723932 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 | || || ||||| || ||||| Sbjct 5723931 AAGGGTCTTCACAAAGATCTGCAT 5723908 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| ||||| ||||| || || | ||| | | ||||| Sbjct 5723889 CACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGGCCATCCTC 5723830 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| | || | |||||||| || || | |||||| ||||| Sbjct 5723829 CAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 5723770 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | | |||||| | || || | |||||| ||||| Sbjct 5723769 GATCTTTGCCTTGACATTGTCAATAGTATCAGAACTTTCAACCTCCAGGGTAATTGTTTT 5723710 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| |||| || || ||||| || ||||| Sbjct 5723709 ACCCGTTAGGGTCTTCACAAATATCTGCAT 5723680 >seq17 Length=27373735 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||| | ||| | ||||| ||||| ||||| || ||||| || Sbjct 16112098 CCTCCACGCAGACGAAGCACGAGGTGAAGGGTAGATTCCTTCTGAATGTTATAATCGGCT 16112039 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||||||||||||||| || ||| | ||||| || |||||||| ||| Sbjct 16112038 AATGTGCGGCCGTCCTCCAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGATCTGGGGGA 16111979 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||| || || || | | | | || |||| ||| Sbjct 16111978 ATTCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCGACC 16111919 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| || || || || || ||||| ||||| || ||||| Sbjct 16111918 TCAAGGGTAATAGTCTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 16111872 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| || | ||| | ||| | |||||| || || ||||| ||||| |||||||| | Sbjct 16112328 TTCCTCCCCGAAGCCTGAGCACTAGGTGCAAAGTGGATTCCTTCTGAATGTTGTAATCAG 16112269 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | | || |||||||| || || || | || || ||||||||||| | Sbjct 16112268 CCAAAGTCCGGCCATCTTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCTGGTG 16112209 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || ||||| |||||| || || | | | || |||| |||| Sbjct 16112208 GGATACCTTCCTTGTCCTGAATTTTTGCCTTAACATTATCAATGGTGTCGCTGCTCTCCA 16112149 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| ||||| || || || || || || ||||| ||||| Sbjct 16112148 CCTCCAGGGTAATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 16112100 >seq2 Length=32417782 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | | ||| || |||| ||| | || ||||||||||| || |||||||| | Sbjct 15025497 TTCCTCCCCTAAGCCTCAAAACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCAG 15025556 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| |||| | | || |||| ||||| || ||| |||| |||||||| ||||| | Sbjct 15025557 CCAATGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGTTGATCAGGAG 15025616 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||| || ||||| Sbjct 15025617 GAATGCCTTCCTTGTC 15025632 >seq4 Length=28735499 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| ||||||||||| || ||||||||||| || | || | | ||||| ||||| Sbjct 24492996 GTGCAAGGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTTCCATCCTCAAGCTG 24493055 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || || |||| | |||||||||||| || | || || ||||| ||||| Sbjct 24493056 CTTTCCAGCGAAAATCAATCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTT 24493115 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | |||||| | ||| || | |||||||| || || || Sbjct 24493116 AGCCTTCACGTTGTCAATAGTATCCGAACTCTCTACCTCCAAAGTAATGGTCTTCCCAGT 24493175 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 | ||| || |||||||| |||||| Sbjct 24493176 AAGAGTCTTCACAAAAATCTGCATT 24493200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414562598788486