Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq10 100 2e-16 seq11 96.9 2e-15 >seq10 Length=26335333 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| ||| || || ||||||||||| | | |||| |||| || ||||| Sbjct 23442345 TGGAGGGTGGACTCCTTCTGGATATTATAATCAGCAAGTGTACGCCCATCCTCTAATTGC 23442404 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||| |||| || ||||| || | |||| ||||| || || |||||| Sbjct 23442405 TTCCCAGCAAAAATCAGCCTCTGCTGATCAGGCGGTATCCCTTCCTTGTCCTGGATTTTT 23442464 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 |||||| || ||| |||||| | ||| || || | || ||||| || ||||| Sbjct 23442465 GCTTTGACATTATCAATAGTATCCGAGCTCTCGACTTCTAGAGTGATTGTCTTCCCGGTC 23442524 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 || ||||||||||| || ||||| Sbjct 23442525 AAGGTCTTCACAAAAATCTGCAT 23442547 >seq11 Length=27369018 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGT 43970 |||||| || || ||| ||| || ||||| || || || | || || ||| |||| | Sbjct 5723889 CACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTC-TGCAAGTGTACGGCCATCCT 5723831 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 ||| || || || ||||| ||||||| |||||||| | || | || || || ||| Sbjct 5723830 CCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTT 5723771 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 || ||| ||||| | ||| |||||| | || || || | |||||||||| Sbjct 5723770 GGATCTTTGCCTTGACATTGTCAATAGTATCAGAACTTTCAACCTCCAGGGTAATTGTTT 5723711 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| |||| |||||||||||||| |||||| Sbjct 5723710 TACCCGTTAGGGTCTTCACAAATATCTGCATG 5723679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354768870142812